- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.2: 5 residues within 4Å:- Chain A: T.190, L.227, N.230, E.231, Y.234
No protein-ligand interaction detected (PLIP)NAG.3: 1 residues within 4Å:- Chain A: N.211
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.211
NAG.4: 1 residues within 4Å:- Chain A: N.201
No protein-ligand interaction detected (PLIP)NAG.5: 3 residues within 4Å:- Chain A: G.237, K.238, N.241
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.237
NAG.9: 5 residues within 4Å:- Chain C: T.190, L.227, N.230, E.231, Y.234
No protein-ligand interaction detected (PLIP)NAG.10: 1 residues within 4Å:- Chain C: N.211
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.211
NAG.11: 1 residues within 4Å:- Chain C: N.201
No protein-ligand interaction detected (PLIP)NAG.12: 3 residues within 4Å:- Chain C: G.237, K.238, N.241
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:G.237
NAG.16: 5 residues within 4Å:- Chain E: T.190, L.227, N.230, E.231, Y.234
No protein-ligand interaction detected (PLIP)NAG.17: 1 residues within 4Å:- Chain E: N.211
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:N.211
NAG.18: 1 residues within 4Å:- Chain E: N.201
No protein-ligand interaction detected (PLIP)NAG.19: 3 residues within 4Å:- Chain E: G.237, K.238, N.241
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:G.237
- 3 x XJ5: [(4S)-4-amino-3,3-dimethylpiperidin-1-yl][(1S,3R,5R,7S)-3-methyl-5-phenyladamantan-1-yl]methanone(Non-covalent)
XJ5.6: 12 residues within 4Å:- Chain A: R.37, V.39, G.40, A.74, G.75, L.159
- Chain B: L.14, Y.16, T.18, Q.20, M.47, L.57
9 PLIP interactions:5 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:L.14, B:Y.16, B:Y.16, B:T.18, B:L.57, A:V.39, A:A.74, A:L.159
- Hydrogen bonds: A:R.37
XJ5.13: 12 residues within 4Å:- Chain C: R.37, V.39, G.40, A.74, G.75, L.159
- Chain D: L.14, Y.16, T.18, Q.20, M.47, L.57
9 PLIP interactions:4 interactions with chain C, 5 interactions with chain D- Hydrophobic interactions: C:V.39, C:A.74, C:L.159, D:L.14, D:Y.16, D:Y.16, D:T.18, D:L.57
- Hydrogen bonds: C:R.37
XJ5.20: 12 residues within 4Å:- Chain E: R.37, V.39, G.40, A.74, G.75, L.159
- Chain F: L.14, Y.16, T.18, Q.20, M.47, L.57
9 PLIP interactions:5 interactions with chain F, 4 interactions with chain E- Hydrophobic interactions: F:L.14, F:Y.16, F:Y.16, F:T.18, F:L.57, E:V.39, E:A.74, E:L.159
- Hydrogen bonds: E:R.37
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 6 residues within 4Å:- Chain B: N.62, E.63, T.65, Q.66
- Chain F: W.30
- Ligands: NAG-NAG-BMA-MAN-MAN.1
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.62, B:E.63, B:Q.66
GOL.14: 6 residues within 4Å:- Chain B: W.30
- Chain D: N.62, E.63, T.65, Q.66
- Ligands: NAG-NAG-BMA-MAN-MAN.8
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:N.62, D:E.63, D:Q.66
GOL.21: 6 residues within 4Å:- Chain D: W.30
- Chain F: N.62, E.63, T.65, Q.66
- Ligands: NAG-NAG-BMA-MAN-MAN.15
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:N.62, F:E.63, F:Q.66
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, L. et al., Crystal structure of Ebola Zaire envelope glycoprotein GP in complex with compound ARN75092. To be Published
- Release Date
- 2023-11-29
- Peptides
- GP1: ACE
GP2: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AB
BD
BF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x XJ5: [(4S)-4-amino-3,3-dimethylpiperidin-1-yl][(1S,3R,5R,7S)-3-methyl-5-phenyladamantan-1-yl]methanone(Non-covalent)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, L. et al., Crystal structure of Ebola Zaire envelope glycoprotein GP in complex with compound ARN75092. To be Published
- Release Date
- 2023-11-29
- Peptides
- GP1: ACE
GP2: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AB
BD
BF
B