- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 8 x ACT: ACETATE ION(Non-functional Binders)
ACT.2: 5 residues within 4Å:- Chain A: F.72, V.73, G.76, R.79, E.109
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:E.109
- Hydrogen bonds: A:E.109
- Salt bridges: A:R.79
ACT.3: 5 residues within 4Å:- Chain A: R.124, S.125, A.126, Q.135, L.136
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:L.136
- Hydrogen bonds: A:Q.135
- Salt bridges: A:R.124
ACT.4: 5 residues within 4Å:- Chain A: T.227, C.232, S.236, E.257, A.261
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:T.227, A:A.261
- Hydrogen bonds: A:S.236
- Salt bridges: A:R.237
ACT.6: 6 residues within 4Å:- Chain A: R.81, K.229, T.230, Y.233, T.234
- Ligands: IPE.5
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.81, A:T.234, A:T.234
- Water bridges: A:D.271, A:D.271
ACT.13: 5 residues within 4Å:- Chain B: F.72, V.73, G.76, R.79, E.109
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:E.109
- Hydrogen bonds: B:E.109
- Salt bridges: B:R.79
ACT.14: 5 residues within 4Å:- Chain B: R.124, S.125, A.126, Q.135, L.136
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:L.136
- Hydrogen bonds: B:Q.135
- Salt bridges: B:R.124
ACT.15: 5 residues within 4Å:- Chain B: T.227, C.232, S.236, E.257, A.261
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:T.227, B:A.261
- Hydrogen bonds: B:S.236
- Salt bridges: B:R.237
ACT.17: 6 residues within 4Å:- Chain B: R.81, K.229, T.230, Y.233, T.234
- Ligands: IPE.16
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.81, B:T.234, B:T.234
- Water bridges: B:D.271, B:D.271
- 2 x IPE: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
IPE.5: 14 residues within 4Å:- Chain A: H.112, A.115, L.116, D.119, D.123, V.201, Q.205, K.229, Y.233, K.295
- Ligands: ACT.6, CA.8, CA.9, CA.10
19 PLIP interactions:19 interactions with chain A- Hydrophobic interactions: A:A.115, A:V.201, A:Q.205, A:K.229, A:Y.233
- Water bridges: A:R.128, A:R.128, A:K.229, A:K.229, A:K.229, A:K.229, A:D.271, A:K.295, A:K.295, A:K.295
- Salt bridges: A:K.229, A:K.229, A:K.295, A:K.295
IPE.16: 14 residues within 4Å:- Chain B: H.112, A.115, L.116, D.119, D.123, V.201, Q.205, K.229, Y.233, K.295
- Ligands: ACT.17, CA.19, CA.20, CA.21
19 PLIP interactions:19 interactions with chain B- Hydrophobic interactions: B:A.115, B:V.201, B:Q.205, B:K.229, B:Y.233
- Water bridges: B:R.128, B:R.128, B:K.229, B:K.229, B:K.229, B:K.229, B:D.271, B:K.295, B:K.295, B:K.295
- Salt bridges: B:K.229, B:K.229, B:K.295, B:K.295
- 6 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
CA.8: 4 residues within 4Å:- Chain A: D.119, D.123
- Ligands: IPE.5, CA.10
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.119, A:D.123, H2O.1, H2O.1, H2O.3
CA.9: 1 residues within 4Å:- Ligands: IPE.5
No protein-ligand interaction detected (PLIP)CA.10: 4 residues within 4Å:- Chain A: D.119, D.123
- Ligands: IPE.5, CA.8
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.119, A:D.123, A:D.123, H2O.2, H2O.3
CA.19: 4 residues within 4Å:- Chain B: D.119, D.123
- Ligands: IPE.16, CA.21
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.119, B:D.123, H2O.4, H2O.5, H2O.6
CA.20: 1 residues within 4Å:- Ligands: IPE.16
No protein-ligand interaction detected (PLIP)CA.21: 4 residues within 4Å:- Chain B: D.119, D.123
- Ligands: IPE.16, CA.19
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.119, B:D.123, B:D.123, H2O.6, H2O.7
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Johnston, J.M. et al., The structure of Rv2173 from M. tuberculosis in APO-, IPP-, and DMAP-bound forms. To be Published
- Release Date
- 2023-11-29
- Peptides
- (2E,6E)-farnesyl diphosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 8 x ACT: ACETATE ION(Non-functional Binders)
- 2 x IPE: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
- 6 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Johnston, J.M. et al., The structure of Rv2173 from M. tuberculosis in APO-, IPP-, and DMAP-bound forms. To be Published
- Release Date
- 2023-11-29
- Peptides
- (2E,6E)-farnesyl diphosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A