SMTL ID : 8f95.1 (1 other biounit)

Crystal structure of Ky15.2 Fab in complex with circumsporozoite protein DND peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-1-1-1-mer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: N.165, T.203 No protein-ligand interaction detected (PLIP) EDO.2: 3 residues within 4Å: Chain A: S.7, S.21, V.23 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.7, A:S.21, A:S.21 EDO.3: 4 residues within 4Å: Chain A: T.145, T.193, V.194, P.195 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.194 EDO.4: 4 residues within 4Å: Chain A: W.47 Chain B: D.1, Y.94, T.96 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.1 Water bridges: A:W.47 EDO.5: 3 residues within 4Å: Chain B: Q.38, G.41, K.42 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.41 EDO.6: 6 residues within 4Å: Chain B: E.142, A.143, K.144, T.196, H.197, Q.198 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Q.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thai, E. et al., Molecular determinants of cross-reactivity and potency by VH3-33 antibodies against the Plasmodium falciparum circumsporozoite protein. Cell Rep (2023)

Release Date

2023-11-01

Peptides

Ky15.2 Antibody, heavy chain: A
Ky15.2 Antibody, light chain: B
Circumsporozoite protein DND peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
P

Ky15.2 Antibody, heavy chain

Ky15.2 Antibody, light chain

Circumsporozoite protein DND peptide

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