SMTL ID : 8fa5.1 (1 other biounit)

Crystal structure of Xanthomonas campestris GH35 beta-galactosidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: E.105, W.242, W.245, F.246, Y.278, Y.311 Ligands: EDO.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.311, A:Y.311 Water bridges: A:E.105, A:E.105, A:N.455 EDO.2: 9 residues within 4Å: Chain A: Y.59, A.102, C.103, A.104, N.163, E.164, E.240, Y.278 Ligands: EDO.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.59, A:A.104, A:N.163, A:E.164, A:Y.278 EDO.3: 4 residues within 4Å: Chain A: P.321, F.325, R.329, L.343 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.329 Water bridges: A:R.329 EDO.4: 5 residues within 4Å: Chain A: A.198, D.199, M.200, L.201, A.202 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.199, A:L.201, A:A.202 Water bridges: A:D.199, A:N.203 EDO.5: 3 residues within 4Å: Chain A: D.316, R.320, W.586 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.316, A:R.320, A:W.586 Water bridges: A:E.317 EDO.6: 3 residues within 4Å: Chain A: A.11, T.12, L.191 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.12, A:T.12 EDO.7: 4 residues within 4Å: Chain A: N.77, F.286, V.537, F.557 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.77 Water bridges: A:N.538 EDO.8: 4 residues within 4Å: Chain A: Q.46, A.342, P.344 Ligands: EDO.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.46, A:A.342 EDO.9: 5 residues within 4Å: Chain A: F.382, G.383, Q.384, P.485, R.489 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.489 Water bridges: A:P.485 EDO.10: 4 residues within 4Å: Chain A: V.395, T.396, R.399, L.478 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.394, A:R.399 EDO.11: 4 residues within 4Å: Chain A: R.49, Q.90, P.341 Ligands: EDO.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Godoy, A.S. et al., Crystal structure of Xanthomonas campestris GanA beta-galactosidase. To Be Published

Release Date

2023-11-29

Peptides

Beta-galactosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-galactosidase

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