SMTL ID : 8fax.1

Fab 1249A8-MERS Stem Helix Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

9 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 3 residues within 4Å: Chain A: R.98, D.106, H.107 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.107, H2O.3, H2O.4 MG.2: 2 residues within 4Å: Chain A: E.10, K.19 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.10, A:K.19, H2O.1 MG.3: 1 residues within 4Å: Chain A: D.213 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.213, A:D.213 MG.4: 2 residues within 4Å: Chain A: H.169 Chain B: T.167 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.169, H2O.2, H2O.8 MG.5: 2 residues within 4Å: Chain A: K.148, D.149 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.149, A:D.149, H2O.4, H2O.8 MG.6: 2 residues within 4Å: Chain A: E.153, V.155 No protein-ligand interaction detected (PLIP) MG.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.8: 2 residues within 4Å: Chain A: N.204, K.211 No protein-ligand interaction detected (PLIP) MG.10: 1 residues within 4Å: Chain C: E.15 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:E.15, C:E.15

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.9: 3 residues within 4Å: Chain B: I.29, R.30, H.91 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deshpande, A. et al., Structure and epitope of a neutralizing monoclonal antibody that targets the stem helix of beta coronaviruses. Febs J. (2023)

Release Date

2023-05-03

Peptides

1249A8-HC: A
1249A8-LC: B
Spike glycoprotein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
L

1249A8-HC

1249A8-LC

Spike glycoprotein