SMTL ID : 8fca.1

Cryo-EM structure of the human TRPV4 - RhoA in complex with 4alpha-Phorbol 12,13-didecanoate

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x XS9: (1aR,1bS,4aS,7aS,7bS,8R,9R,9aS)-9a-(decanoyloxy)-4a,7b-dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1a,1b,4,4a,5,7a,7b,8,9,9a-decahydro-1H-cyclopropa[3,4]benzo[1,2-e]azulen-9-yl decanoate(Non-covalent)

XS9.1: 12 residues within 4Å: Chain A: N.474, L.523, F.524, T.527, N.528, Q.550, Y.553, F.592, R.594, D.743, I.744, S.747 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.553 Hydrogen bonds: A:N.474, A:T.527, A:T.527, A:R.594, A:S.747 XS9.3: 12 residues within 4Å: Chain B: N.474, L.523, F.524, T.527, N.528, Q.550, Y.553, F.592, R.594, D.743, I.744, S.747 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Y.553 Hydrogen bonds: B:N.474, B:T.527, B:T.527, B:R.594, B:S.747 XS9.6: 12 residues within 4Å: Chain C: N.474, L.523, F.524, T.527, N.528, Q.550, Y.553, F.592, R.594, D.743, I.744, S.747 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:Y.553 Hydrogen bonds: C:N.474, C:T.527, C:T.527, C:R.594, C:S.747 XS9.8: 12 residues within 4Å: Chain D: N.474, L.523, F.524, T.527, N.528, Q.550, Y.553, F.592, R.594, D.743, I.744, S.747 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:Y.553 Hydrogen bonds: D:N.474, D:T.527, D:T.527, D:R.594, D:S.747

4 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.2: 13 residues within 4Å: Chain A: L.618, Y.621, L.622, M.625, S.667, T.668, L.670, L.671, F.674 Chain D: V.693, I.696, V.700, I.704 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: A:L.670, A:L.671, A:F.674, A:F.674, A:F.674, D:I.696 Y01.4: 13 residues within 4Å: Chain B: L.618, Y.621, L.622, M.625, S.667, T.668, L.670, L.671, F.674 Chain C: V.693, I.696, V.700, I.704 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:L.670, B:L.671, B:F.674, B:F.674, B:F.674, C:I.696 Y01.5: 13 residues within 4Å: Chain A: V.693, I.696, V.700, I.704 Chain C: L.618, Y.621, L.622, M.625, S.667, T.668, L.670, L.671, F.674 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain C Hydrophobic interactions: A:I.696, C:L.670, C:L.671, C:F.674, C:F.674 Y01.7: 13 residues within 4Å: Chain B: V.693, I.696, V.700, I.704 Chain D: L.618, Y.621, L.622, M.625, S.667, T.668, L.670, L.671, F.674 7 PLIP interactions: 1 interactions with chain B, 6 interactions with chain D Hydrophobic interactions: B:I.696, D:L.670, D:L.671, D:L.671, D:F.674, D:F.674, D:F.674

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kwon, D.H. et al., TRPV4-Rho GTPase complex structures reveal mechanisms of gating and disease. Nat Commun (2023)

Release Date

2023-07-12

Peptides

Transient receptor potential cation channel subfamily V member 4: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 4

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