SMTL ID : 8fd8.1

human 15-PGDH with NADH bound

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 19 residues within 4Å: Chain A: G.12, Q.15, G.16, I.17, D.36, W.37, D.64, V.65, N.91, A.92, G.93, I.106, S.137, S.138, Y.151, K.155, P.183, G.184, V.186 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:A.14, A:Q.15, A:I.17, A:G.18, A:D.64, A:D.64, A:V.65, A:N.91, A:G.93, A:K.155, A:K.155 pi-Stacking: A:W.37, A:W.37 NAI.2: 19 residues within 4Å: Chain B: G.12, Q.15, I.17, D.36, W.37, N.38, D.64, V.65, N.91, A.92, G.93, V.94, I.106, M.136, S.137, S.138, Y.151, P.183, G.184 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:P.183 Hydrogen bonds: B:Q.15, B:I.17, B:N.38, B:V.65, B:V.65, B:N.91, B:G.93, B:Y.151, B:Y.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, W. et al., Small molecule inhibitors of 15-PGDH exploit a physiologic induced-fit closing system. Nat Commun (2023)

Release Date

2023-03-08

Peptides

15-hydroxyprostaglandin dehydrogenase [NAD(+)]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

15-hydroxyprostaglandin dehydrogenase [NAD(+)]