SMTL ID : 8fdu.1

Engineered human dynein motor domain in the microtubule-unbound state with LIS1 complex in the buffer containing ATP-Vi (local refined on AAA3-AAA5 and LIS1)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-mer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: V.1113, V.1114, P.1142, G.1143, S.1144, G.1145, K.1146, T.1147, M.1148, P.1284, I.1292, Y.1293, P.1341, R.1342, T.1345 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:V.1114, A:V.1114, A:T.1119, A:G.1143, A:G.1145, A:K.1146, A:T.1147, A:T.1147, A:T.1147, A:M.1148 Salt bridges: A:K.1146, A:R.1342, A:R.1342 ADP.2: 16 residues within 4Å: Chain A: V.1452, P.1453, L.1454, V.1455, F.1457, V.1483, S.1484, G.1485, A.1486, G.1487, K.1488, T.1489, T.1490, W.1642, R.1719, L.1722 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:V.1455, A:V.1455, A:G.1485, A:A.1486, A:G.1487, A:K.1488, A:T.1489, A:T.1489, A:T.1489, A:T.1490, A:R.1719 Salt bridges: A:K.1488

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ton, W.D. et al., Microtubule-binding-induced allostery triggers LIS1 dissociation from dynein prior to cargo transport. Nat.Struct.Mol.Biol. (2023)

Release Date

2023-06-21

Peptides

Cytoplasmic dynein 1 heavy chain 1,Serine--tRNA ligase: A
Platelet-activating factor acetylhydrolase IB subunit beta,Platelet-activating factor acetylhydrolase IB subunit beta,human LIS1 protein with a SNAP tag: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Cytoplasmic dynein 1 heavy chain 1,Serine--tRNA ligase

Platelet-activating factor acetylhydrolase IB subunit beta,Platelet-activating factor acetylhydrolase IB subunit beta,human LIS1 protein with a SNAP tag

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