SMTL ID : 8fed.1

Structure of Mce1-LucB complex from Mycobacterium smegmatis (Map1)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-2-1-1-1-mer

Ligands

31 x UNL: UNKNOWN LIGAND(Non-functional Binders)

UNL.1: 22 residues within 4Å: Chain A: Y.295, A.298, L.299, T.302, L.324, T.326 Chain B: F.307 Chain C: L.294, L.298 Chain D: Y.306, L.309, V.313, I.324 Chain E: V.310, P.311 Chain F: V.286, L.287, L.290, P.291, G.293, V.296 Ligands: UNL.19 Ligand excluded by PLIP UNL.2: 4 residues within 4Å: Chain A: Y.225, L.232 Chain E: L.222 Ligands: UNL.26 Ligand excluded by PLIP UNL.3: 7 residues within 4Å: Chain B: L.275, L.286 Chain C: L.280, L.284 Chain D: L.299 Chain E: L.304 Ligands: UNL.19 Ligand excluded by PLIP UNL.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNL.5: 3 residues within 4Å: Chain A: F.271 Chain D: T.265 Chain E: A.268 Ligand excluded by PLIP UNL.6: 10 residues within 4Å: Chain A: I.211, I.215 Chain B: T.180, L.183, L.187 Chain F: I.199 Ligands: UNL.8, UNL.11, UNL.12, UNL.14 Ligand excluded by PLIP UNL.7: 8 residues within 4Å: Chain B: T.208, F.215 Chain C: V.203 Chain E: F.240 Ligands: UNL.11, UNL.23, UNL.26, UNL.31 Ligand excluded by PLIP UNL.8: 8 residues within 4Å: Chain B: T.180 Chain C: V.179, F.182 Chain D: L.195, L.202 Ligands: UNL.6, UNL.14, UNL.17 Ligand excluded by PLIP UNL.9: 6 residues within 4Å: Chain A: I.194 Chain B: L.162, F.166, I.173 Chain C: V.165 Ligands: UNL.14 Ligand excluded by PLIP UNL.10: 5 residues within 4Å: Chain B: F.222 Chain C: L.218, L.225 Chain D: F.240 Chain E: F.254 Ligand excluded by PLIP UNL.11: 7 residues within 4Å: Chain C: A.200, V.203, L.207 Chain D: F.209 Ligands: UNL.6, UNL.7, UNL.12 Ligand excluded by PLIP UNL.12: 5 residues within 4Å: Chain B: L.187 Chain D: L.202 Ligands: UNL.6, UNL.11, UNL.17 Ligand excluded by PLIP UNL.13: 8 residues within 4Å: Chain A: F.120 Chain B: V.140, F.147 Chain C: I.102, A.138, F.139 Chain E: L.118 Ligands: UNL.20 Ligand excluded by PLIP UNL.14: 14 residues within 4Å: Chain A: L.172 Chain B: T.180 Chain C: V.179 Chain D: F.177, F.181 Chain E: L.198 Chain F: L.159, A.163 Ligands: UNL.6, UNL.8, UNL.9, UNL.20, UNL.25, UNL.28 Ligand excluded by PLIP UNL.15: 15 residues within 4Å: Chain C: I.135, Y.136, F.139, V.142 Chain D: N.107, S.109, L.110, Y.145, V.152, L.155, L.156 Chain F: A.140, L.141, A.144 Ligands: UNL.20 Ligand excluded by PLIP UNL.16: 2 residues within 4Å: Chain C: V.249 Chain D: T.265 Ligand excluded by PLIP UNL.17: 4 residues within 4Å: Chain D: L.202, F.209 Ligands: UNL.8, UNL.12 Ligand excluded by PLIP UNL.18: 5 residues within 4Å: Chain D: L.156, L.159, F.170 Chain F: G.147, L.151 Ligand excluded by PLIP UNL.19: 7 residues within 4Å: Chain C: A.287 Chain D: L.299, G.302, L.303 Chain E: L.308 Ligands: UNL.1, UNL.3 Ligand excluded by PLIP UNL.20: 15 residues within 4Å: Chain A: F.153, I.160 Chain C: L.158 Chain D: I.173, I.174, F.177 Chain E: I.161, I.164, I.173 Chain F: L.159 Ligands: UNL.13, UNL.14, UNL.15, UNL.24, UNL.28 Ligand excluded by PLIP UNL.21: 27 residues within 4Å: Chain B: F.54, Q.100, D.101, I.103 Chain E: A.66, L.67, N.68, S.71, L.119, G.120, S.121, Q.122 Chain I: V.89, G.93, Q.101, L.105, A.187, S.190, T.191, L.194, L.195 Chain J: L.91, I.92, Q.95, I.103, F.112, V.121 Ligand excluded by PLIP UNL.22: 8 residues within 4Å: Chain A: L.218, G.222, Y.225 Chain E: I.212, A.215, I.216, T.219, L.222 Ligand excluded by PLIP UNL.23: 4 residues within 4Å: Chain E: F.247, F.254 Ligands: UNL.7, UNL.31 Ligand excluded by PLIP UNL.24: 5 residues within 4Å: Chain B: V.155, I.158 Chain C: V.154 Chain E: Q.177 Ligands: UNL.20 Ligand excluded by PLIP UNL.25: 6 residues within 4Å: Chain A: S.193, G.197 Chain E: F.194, L.198 Ligands: UNL.14, UNL.28 Ligand excluded by PLIP UNL.26: 4 residues within 4Å: Chain F: W.219, L.223 Ligands: UNL.2, UNL.7 Ligand excluded by PLIP UNL.27: 4 residues within 4Å: Chain A: D.214 Chain D: N.234 Chain F: S.202, Q.209 Ligand excluded by PLIP UNL.28: 10 residues within 4Å: Chain A: L.176, F.190 Chain D: L.199 Chain F: F.167, V.178, I.184, F.188 Ligands: UNL.14, UNL.20, UNL.25 Ligand excluded by PLIP UNL.29: 6 residues within 4Å: Chain A: L.285 Chain E: L.279, L.283 Chain F: L.266, L.269, I.273 Ligand excluded by PLIP UNL.30: 4 residues within 4Å: Chain A: F.263 Chain F: L.241, A.248, L.251 Ligand excluded by PLIP UNL.31: 6 residues within 4Å: Chain A: T.242, L.246 Chain D: L.251 Chain E: F.247 Ligands: UNL.7, UNL.23 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, J. et al., Structure of an endogenous mycobacterial MCE lipid transporter. Nature (2023)

Release Date

2023-02-22

Peptides

Virulence factor Mce family protein: A
Virulence factor Mce family protein: B
MCE-family protein MCE1c: C
Virulence factor mce family protein: D
Virulence factor Mce family protein: E
Mce-family protein mce1f: F
ABC transporter, ATP-binding protein,Green fluorescent protein chimera: GH
Conserved hypothetical integral membrane protein Yrbe1a: I
ABC-transporter integral membrane protein: J
Transmembrane protein: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

Membrane

We predict this structure to be a membrane protein.
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Virulence factor Mce family protein

Virulence factor Mce family protein

MCE-family protein MCE1c

Virulence factor mce family protein

Virulence factor Mce family protein

Mce-family protein mce1f

ABC transporter, ATP-binding protein,Green fluorescent protein chimera

Conserved hypothetical integral membrane protein Yrbe1a

ABC-transporter integral membrane protein

Transmembrane protein

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