SMTL ID : 8fh9.1

Crystal Structure Of Aldose Reductase (AKR1B1) Complexed With NADP+ And AT-007

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 33 residues within 4Å: Chain A: G.19, T.20, W.21, K.22, D.44, Y.49, K.78, H.111, W.112, S.160, N.161, Q.184, Y.210, S.211, P.212, L.213, G.214, S.215, P.216, D.217, L.229, A.246, I.261, P.262, K.263, S.264, V.265, T.266, R.269, E.272, N.273, C.299 Ligands: XYK.2 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:W.21 Hydrogen bonds: A:T.20, A:W.21, A:W.21, A:W.21, A:D.44, A:H.111, A:N.161, A:Q.184, A:S.211, A:L.213, A:S.215, A:S.215, A:D.217, A:K.263, A:S.264, A:S.264, A:V.265, A:T.266, A:E.272, A:N.273 Water bridges: A:D.217, A:D.217, A:R.269 Salt bridges: A:K.22, A:K.263, A:R.269 pi-Stacking: A:Y.210

1 x XYK: (4-oxo-3-{[5-(trifluoromethyl)-1,3-benzothiazol-2-yl]methyl}-3,4-dihydrothieno[3,4-d]pyridazin-1-yl)acetic acid(Non-covalent)

XYK.2: 20 residues within 4Å: Chain A: W.21, V.48, Y.49, W.80, C.81, H.111, W.112, P.113, T.114, F.116, F.123, W.220, C.299, A.300, L.301, C.304, Y.310, P.311, F.312 Ligands: NAP.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.21, A:W.21, A:W.112, A:W.112, A:W.112, A:F.116, A:F.123 Hydrogen bonds: A:Y.49, A:W.112 Salt bridges: A:H.111

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 11 residues within 4Å: Chain A: S.3, R.4, P.14, I.15, L.16, G.39, Y.40, R.41, H.42, F.274, F.277 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.15, A:L.16, A:L.16, A:G.39, A:R.41 EDO.4: 8 residues within 4Å: Chain A: H.47, W.80, T.82, Y.83, G.119, K.120, E.121, F.122 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.47, A:Y.83 Water bridges: A:G.119 EDO.5: 8 residues within 4Å: Chain A: H.47, Q.50, N.51, E.52, N.53, E.54, K.95, D.99 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.50, A:N.51, A:E.52, A:N.53, A:E.54, A:D.99 Water bridges: A:H.47 EDO.6: 7 residues within 4Å: Chain A: N.130, V.131, P.133, S.303, C.304, S.306, H.307 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.131, A:S.303, A:S.306 EDO.7: 5 residues within 4Å: Chain A: E.168, L.171, N.172, Y.199, K.203 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.168, A:Y.199, A:K.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arenas, R. et al., Crystal Structure Of Aldose Reductase (AKR1B1) Complexed With NADP+ And AT-007. To Be Published

Release Date

2023-12-20

Peptides

Aldo-keto reductase family 1 member B1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aldo-keto reductase family 1 member B1

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