SMTL ID : 8fik.1 (1 other biounit)

APOBEC3A E72A inactive mutant in complex with ATTC-hairpin DNA substrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.70, C.101, C.106 Ligands: CL.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.70, A:C.101, A:C.106

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: H.70, P.100, C.101, C.106 Chain B: C.10 Ligands: ZN.1 Ligand excluded by PLIP

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 1 residues within 4Å: Chain A: S.103 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.103

1 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.4: 3 residues within 4Å: Chain A: K.159, H.160, D.163 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.163, A:D.163 Water bridges: A:H.160, A:H.160 Salt bridges: A:K.159, A:K.159, A:H.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harjes, S. et al., Structure-guided inhibition of the cancer DNA-mutating enzyme APOBEC3A. Nat Commun (2023)

Release Date

2023-09-06

Peptides

DNA dC->dU-editing enzyme APOBEC-3A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA dC->dU-editing enzyme APOBEC-3A

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