SMTL ID : 8fjk.1

Golden Shiner Reovirus Core Polar Vertex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-10-5-10-5-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain E: C.43, C.46, H.59, H.64 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.43, E:C.46, E:H.59, E:H.64 ZN.2: 4 residues within 4Å: Chain G: C.43, C.46, H.59, H.64 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.43, G:C.46, G:H.59, G:H.64 ZN.3: 4 residues within 4Å: Chain I: C.43, C.46, H.59, H.64 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.43, I:C.46, I:H.59, I:H.64 ZN.4: 4 residues within 4Å: Chain K: C.43, C.46, H.59, H.64 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.43, K:C.46, K:H.59, K:H.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stevens, A. et al., Asymmetric reconstruction of the aquareovirus core at near-atomic resolution and mechanism of transcription initiation. Protein Cell (2023)

Release Date

2023-03-22

Peptides

RNA-directed RNA polymerase VP2: A
Microtubule-associated protein VP5: B
Major inner capsid protein VP3: CDEFGHIJKL
Major inner capsid protein VP3: MNefg
Clamp protein VP6: OPQT089bch
Outer capsid protein VP1: RS7ad

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

e
k

f
l

g
m

O
V

P
W

Q
X

T
a

0
b

8
d

9
e

b
g

c
h

h
n

R
Y

S
Z

7
c

a
f

d
i

RNA-directed RNA polymerase VP2

Microtubule-associated protein VP5

Major inner capsid protein VP3

Major inner capsid protein VP3

Clamp protein VP6

Outer capsid protein VP1

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