SMTL ID : 8fnw.1

Structure of RdrA-RdrB complex from Escherichia coli RADAR defense system

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-12-7-mer

Ligands

12 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.152, H.154, H.498, E.501, H.530 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.152, A:H.154, A:H.498, A:H.530 ZN.2: 4 residues within 4Å: Chain B: H.152, H.154, H.498, H.530 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.152, B:H.154, B:H.498, B:H.530 ZN.3: 5 residues within 4Å: Chain C: H.152, H.154, H.498, E.501, H.530 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.152, C:H.154, C:H.498, C:H.530 ZN.4: 4 residues within 4Å: Chain D: H.152, H.154, H.498, H.530 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.152, D:H.154, D:H.498, D:H.530 ZN.5: 4 residues within 4Å: Chain E: H.152, H.154, H.498, H.530 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.152, E:H.154, E:H.498, E:H.530 ZN.6: 4 residues within 4Å: Chain F: H.152, H.154, H.498, H.530 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.152, F:H.154, F:H.498, F:H.530 ZN.7: 4 residues within 4Å: Chain G: H.152, H.154, H.498, H.530 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:H.152, G:H.154, G:H.498, G:H.530 ZN.8: 5 residues within 4Å: Chain H: H.152, H.154, H.498, E.501, H.530 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:H.152, H:H.154, H:H.498, H:H.530 ZN.9: 4 residues within 4Å: Chain I: H.152, H.154, H.498, H.530 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:H.152, I:H.154, I:H.498, I:H.530 ZN.10: 4 residues within 4Å: Chain J: H.152, H.154, H.498, H.530 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:H.152, J:H.154, J:H.498, J:H.530 ZN.11: 5 residues within 4Å: Chain K: H.152, H.154, H.498, E.501, H.530 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:H.152, K:H.154, K:H.498, K:H.530 ZN.12: 4 residues within 4Å: Chain L: H.152, H.154, H.498, H.530 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:H.152, L:H.154, L:H.498, L:H.530

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Duncan-Lowey, B. et al., Cryo-EM structure of the RADAR supramolecular anti-phage defense complex. Cell (2023)

Release Date

2023-02-01

Peptides

Adenosine deaminase: ABCDEFGHIJKL
Archaeal ATPase: MNOPQRS

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

Adenosine deaminase

Archaeal ATPase

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