SMTL ID : 8fpi.1

Co-structure of the Respiratory Syncytial Virus RNA-dependent RNA polymerase with MRK-1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.39 Å

Oligo State

hetero-1-4-mer

Ligands

1 x Y6L: 4-(2-aminopropan-2-yl)-N'-[4-(cyclopropyloxy)-3-methoxybenzoyl]-6-(4-fluorophenyl)pyridine-2-carbohydrazide(Non-covalent)

Y6L.1: 30 residues within 4Å: Chain A: P.1039, H.1157, G.1255, V.1256, T.1257, S.1258, I.1278, S.1303, L.1374, H.1375, R.1382, F.1386, T.1402, I.1405, N.1406, L.1409, T.1410, Y.1413, G.1414, D.1415, E.1416, D.1417, I.1418, D.1419, I.1420, V.1421, F.1422, Q.1423, C.1425, M.1459 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:P.1039, A:I.1405, A:L.1409, A:I.1418 Hydrogen bonds: A:R.1382, A:T.1410, A:T.1410, A:I.1418, A:I.1418, A:I.1420, A:F.1422 pi-Stacking: A:F.1422

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kleiner, V.A. et al., Conserved allosteric inhibitory site on the respiratory syncytial virus and human metapneumovirus RNA-dependent RNA polymerases. Commun Biol (2023)

Release Date

2023-06-14

Peptides

RNA-directed RNA polymerase L: A
Phosphoprotein: BCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

RNA-directed RNA polymerase L

Phosphoprotein

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