SMTL ID : 8fpj.1

Co-structure of the Human Metapneunomovirus RNA-dependent RNA polymerase with MRK-1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.74 Å

Oligo State

hetero-1-4-mer

Ligands

1 x Y6L: 4-(2-aminopropan-2-yl)-N'-[4-(cyclopropyloxy)-3-methoxybenzoyl]-6-(4-fluorophenyl)pyridine-2-carbohydrazide(Non-covalent)

Y6L.1: 29 residues within 4Å: Chain A: P.973, H.1082, G.1180, V.1181, T.1182, S.1183, I.1203, S.1228, L.1299, H.1300, R.1307, F.1311, T.1327, I.1330, N.1331, L.1334, S.1335, G.1339, N.1340, E.1341, D.1342, I.1343, N.1344, L.1345, V.1346, F.1347, Q.1348, A.1350, M.1384 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.1330, A:L.1334, A:F.1347 Hydrogen bonds: A:H.1300, A:R.1307, A:R.1307, A:I.1343, A:I.1343, A:L.1345, A:F.1347 pi-Stacking: A:F.1347

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kleiner, V.A. et al., Conserved allosteric inhibitory site on the respiratory syncytial virus and human metapneumovirus RNA-dependent RNA polymerases. Commun Biol (2023)

Release Date

2023-06-14

Peptides

RNA-directed RNA polymerase L: A
Phosphoprotein: BCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

RNA-directed RNA polymerase L

Phosphoprotein