SMTL ID : 8fqc.1 (1 other biounit)

Structure of baseplate with receptor binding complex of Agrobacterium phage Milano

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-4-4-2-4-2-6-12-2-1-mer

Ligands

1 x FE: FE (III) ION(Non-covalent)

FE.1: 2 residues within 4Å: Chain b: H.166, H.168 2 PLIP interactions: 2 interactions with chain b Metal complexes: b:H.166, b:H.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sonani, R.R. et al., An extensive disulfide bond network prevents tail contraction in Agrobacterium tumefaciens phage Milano. Nat Commun (2024)

Release Date

2024-01-31

Peptides

Baseplate hub protein, gp26: A
Tail-tube, gp21: BSUV
Baseplate Wedge 2 protein, gp29: CDWX
Baseplate wedge 1, gp28: EY
Tail sheath protein, gp20: FHZ1
Baseplate Wedge 3 protein, gp30: G0
Tail Spike protein, gp124: IJK234
Short Tail Fibers, gp31: LMOPQR56789a
Baseplate Centerpiece, gp25: NT
Baseplate Central Spike, gp27: b

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C1

B
E1

S
a1

U
f1

V
g1

C
F1

D
G1

W
h1

X
i1

E
H1

Y
j1

F
I1

H
K1

Z
k1

1
m1

G
J1

0
l1

I
P1

J
Q1

K
R1

2
r1

3
s1

4
t1

L
S1

M
T1

O
V1

P
W1

Q
X1

R
Y1

5
v1

6
w1

7
x1

8
y1

9
u1

a
z1

N
U1

T
e1

b
A

Baseplate hub protein, gp26

Tail-tube, gp21

Baseplate Wedge 2 protein, gp29

Baseplate wedge 1, gp28

Tail sheath protein, gp20

Baseplate Wedge 3 protein, gp30

Tail Spike protein, gp124

Short Tail Fibers, gp31

Baseplate Centerpiece, gp25

Baseplate Central Spike, gp27

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