SMTL ID : 8fr7.1

A hinge glycan regulates spike bending and impacts coronavirus infectivity

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

36 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN.1: 1 residues within 4Å: Chain A: N.155 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.9: 3 residues within 4Å: Chain A: N.401, N.403, T.405 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.15: 1 residues within 4Å: Chain A: N.645 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.16: 4 residues within 4Å: Chain A: V.474, G.615, N.666, S.668 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.17: 2 residues within 4Å: Chain A: N.699, Y.715 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.20: 2 residues within 4Å: Chain A: N.762 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN.25 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.23: 2 residues within 4Å: Chain A: N.852, S.854 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.25: 5 residues within 4Å: Chain A: I.758, S.1145, N.1196, T.1198 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN.20 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.28: 2 residues within 4Å: Chain A: N.24, W.48 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.32: 1 residues within 4Å: Chain A: N.178 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.34: 3 residues within 4Å: Chain A: D.34, N.35, H.197 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.36: 3 residues within 4Å: Chain A: I.39, N.193, T.195 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.38: 1 residues within 4Å: Chain B: N.155 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.46: 3 residues within 4Å: Chain B: N.401, N.403, T.405 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.52: 1 residues within 4Å: Chain B: N.645 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.53: 5 residues within 4Å: Chain B: V.474, G.615, L.622, N.666, S.668 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.54: 2 residues within 4Å: Chain B: N.699, Y.715 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.57: 2 residues within 4Å: Chain B: N.762 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN.62 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.60: 3 residues within 4Å: Chain B: N.852, S.854, N.984 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.62: 5 residues within 4Å: Chain B: I.758, S.1145, N.1196, T.1198 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN.57 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.65: 2 residues within 4Å: Chain B: N.24, W.48 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.69: 1 residues within 4Å: Chain B: N.178 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.71: 3 residues within 4Å: Chain B: D.34, N.35, H.197 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.73: 3 residues within 4Å: Chain B: I.39, N.193, T.195 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.75: 1 residues within 4Å: Chain C: N.155 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.83: 3 residues within 4Å: Chain C: N.401, N.403, T.405 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.89: 1 residues within 4Å: Chain C: N.645 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.90: 4 residues within 4Å: Chain C: V.474, G.615, N.666, S.668 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.91: 2 residues within 4Å: Chain C: N.699, Y.715 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.94: 2 residues within 4Å: Chain C: N.762 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN.99 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.97: 2 residues within 4Å: Chain C: N.852, S.854 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.99: 5 residues within 4Å: Chain C: I.758, S.1145, N.1196, T.1198 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN.94 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.102: 2 residues within 4Å: Chain C: N.24, W.48 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.106: 1 residues within 4Å: Chain C: N.178 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.108: 3 residues within 4Å: Chain C: D.34, N.35, H.197 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.110: 3 residues within 4Å: Chain C: I.39, N.193, T.195 No protein-ligand interaction detected (PLIP)

57 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN.2: 3 residues within 4Å: Chain A: F.49, V.185, N.187 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.5: 4 residues within 4Å: Chain A: N.301, S.408, T.410, W.413 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.6: 3 residues within 4Å: Chain A: N.330, D.337, Q.347 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.7: 6 residues within 4Å: Chain A: L.325, Y.327, V.335, L.336, N.354, H.361 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.8: 3 residues within 4Å: Chain A: N.358, S.533, S.535 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.11: 3 residues within 4Å: Chain A: N.486, N.510, I.527 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.12: 2 residues within 4Å: Chain A: N.506, K.532 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.13: 2 residues within 4Å: Chain A: N.510, N.512 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.14: 1 residues within 4Å: Chain A: N.626 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.18: 4 residues within 4Å: Chain A: N.723 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN.31, NAG-NAG-BMA-MAN-MAN-MAN-MAN.31, NAG-NAG-BMA-MAN-MAN-MAN-MAN.31 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.19: 2 residues within 4Å: Chain A: R.746, N.749 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.21: 3 residues within 4Å: Chain A: N.768, L.968, D.1137 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.22: 2 residues within 4Å: Chain A: N.844, R.860 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.24: 4 residues within 4Å: Chain A: Q.999, E.1002, Y.1106, N.1111 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:E.1002 NAG-NAG-BMA-MAN-MAN-MAN-MAN.26: 3 residues within 4Å: Chain A: V.1197, F.1199, N.1201 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.29: 1 residues within 4Å: Chain A: N.203 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.30: 2 residues within 4Å: Chain A: N.52, Q.53 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.31: 3 residues within 4Å: Chain A: N.98, Q.135 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN.18 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.35: 8 residues within 4Å: Chain A: Y.82, R.110, N.111, T.112 Ligands: NAG-NAG-BMA-MAN-MAN.33, NAG-NAG-BMA-MAN-MAN.33, NAG-NAG-BMA-MAN-MAN.33, NAG-NAG-BMA-MAN-MAN.33 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.39: 3 residues within 4Å: Chain B: F.49, V.185, N.187 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.42: 4 residues within 4Å: Chain B: N.301, S.408, T.410, W.413 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.43: 3 residues within 4Å: Chain B: N.330, D.337, Q.347 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.44: 6 residues within 4Å: Chain B: L.325, Y.327, V.335, L.336, N.354, H.361 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.45: 3 residues within 4Å: Chain B: N.358, S.533, S.535 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.48: 3 residues within 4Å: Chain B: N.486, N.510, I.527 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.49: 3 residues within 4Å: Chain B: A.491, N.506, K.532 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.50: 2 residues within 4Å: Chain B: N.510, N.512 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.51: 1 residues within 4Å: Chain B: N.626 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.55: 4 residues within 4Å: Chain B: N.723 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN.68, NAG-NAG-BMA-MAN-MAN-MAN-MAN.68, NAG-NAG-BMA-MAN-MAN-MAN-MAN.68 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.56: 2 residues within 4Å: Chain B: R.746, N.749 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.746 NAG-NAG-BMA-MAN-MAN-MAN-MAN.58: 3 residues within 4Å: Chain B: N.768, L.968, D.1137 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.59: 2 residues within 4Å: Chain B: N.844, R.860 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.61: 4 residues within 4Å: Chain B: Q.999, E.1002, Y.1106, N.1111 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:E.1002 NAG-NAG-BMA-MAN-MAN-MAN-MAN.63: 3 residues within 4Å: Chain B: V.1197, F.1199, N.1201 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.66: 1 residues within 4Å: Chain B: N.203 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.67: 2 residues within 4Å: Chain B: N.52, Q.53 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.68: 3 residues within 4Å: Chain B: N.98, Q.135 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN.55 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.72: 8 residues within 4Å: Chain B: Y.82, R.110, N.111, T.112 Ligands: NAG-NAG-BMA-MAN-MAN.70, NAG-NAG-BMA-MAN-MAN.70, NAG-NAG-BMA-MAN-MAN.70, NAG-NAG-BMA-MAN-MAN.70 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.76: 3 residues within 4Å: Chain C: F.49, V.185, N.187 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.79: 4 residues within 4Å: Chain C: N.301, S.408, T.410, W.413 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.80: 3 residues within 4Å: Chain C: N.330, D.337, Q.347 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.81: 6 residues within 4Å: Chain C: L.325, Y.327, V.335, L.336, N.354, H.361 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.82: 3 residues within 4Å: Chain C: N.358, S.533, S.535 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.85: 3 residues within 4Å: Chain C: N.486, N.510, I.527 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.86: 3 residues within 4Å: Chain C: A.491, N.506, K.532 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.87: 2 residues within 4Å: Chain C: N.510, N.512 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.88: 1 residues within 4Å: Chain C: N.626 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.92: 4 residues within 4Å: Chain C: N.723 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN.105, NAG-NAG-BMA-MAN-MAN-MAN-MAN.105, NAG-NAG-BMA-MAN-MAN-MAN-MAN.105 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.93: 2 residues within 4Å: Chain C: R.746, N.749 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.95: 3 residues within 4Å: Chain C: N.768, L.968, D.1137 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.96: 2 residues within 4Å: Chain C: N.844, R.860 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.98: 4 residues within 4Å: Chain C: Q.999, E.1002, Y.1106, N.1111 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:E.1002 NAG-NAG-BMA-MAN-MAN-MAN-MAN.100: 3 residues within 4Å: Chain C: V.1197, F.1199, N.1201 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.103: 1 residues within 4Å: Chain C: N.203 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.104: 3 residues within 4Å: Chain C: N.52, Q.53, N.178 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.105: 3 residues within 4Å: Chain C: N.98, Q.135 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN.92 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.109: 8 residues within 4Å: Chain C: Y.82, R.110, N.111, T.112 Ligands: NAG-NAG-BMA-MAN-MAN.107, NAG-NAG-BMA-MAN-MAN.107, NAG-NAG-BMA-MAN-MAN.107, NAG-NAG-BMA-MAN-MAN.107 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN.3: 7 residues within 4Å: Chain A: L.238, N.240, V.292, R.380, T.381, Q.383, Y.385 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN.40: 7 residues within 4Å: Chain B: L.238, N.240, V.292, R.380, T.381, Q.383, Y.385 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN.77: 7 residues within 4Å: Chain C: L.238, N.240, V.292, R.380, T.381, Q.383, Y.385 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA- MAN- NAG- GAL- MAN- NAG- GAL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-GAL.4: 3 residues within 4Å: Chain A: Y.274, N.276, T.278 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-GAL.41: 3 residues within 4Å: Chain B: Y.274, N.276, T.278 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-GAL.78: 3 residues within 4Å: Chain C: Y.274, N.276, T.278 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.10: 10 residues within 4Å: Chain A: E.147, Y.166, K.167, N.426, S.428, Q.433, N.434 Chain C: S.647, L.648, A.649 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.47: 10 residues within 4Å: Chain A: S.647, L.648, A.649 Chain B: E.147, Y.166, K.167, N.426, S.428, Q.433, N.434 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.84: 10 residues within 4Å: Chain B: S.647, L.648, A.649 Chain C: E.147, Y.166, K.167, N.426, S.428, Q.433, N.434 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA- MAN- NAG- GAL- NAG- GAL- MAN- NAG- GAL- FUC: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-L-fucopyranose-(1-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL-NAG-GAL-MAN-NAG-GAL-FUC.27: 2 residues within 4Å: Chain A: N.1218, Q.1222 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-NAG-GAL-NAG-GAL-MAN-NAG-GAL-FUC.64: 2 residues within 4Å: Chain B: N.1218, Q.1222 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-NAG-GAL-NAG-GAL-MAN-NAG-GAL-FUC.101: 3 residues within 4Å: Chain A: Y.1231 Chain C: N.1218, Q.1222 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.33: 17 residues within 4Å: Chain A: V.57, A.76, H.78, G.80, Y.81, Y.82, Y.90, F.108, N.111, T.112, T.113, F.114, D.115, N.119 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN.35, NAG-NAG-BMA-MAN-MAN-MAN-MAN.35, NAG-NAG-BMA-MAN-MAN-MAN-MAN.35 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.82, A:H.78, A:N.111 Hydrophobic interactions: A:F.114 NAG-NAG-BMA-MAN-MAN.70: 17 residues within 4Å: Chain B: V.57, A.76, H.78, G.80, Y.81, Y.82, Y.90, F.108, N.111, T.112, T.113, F.114, D.115, N.119 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN.72, NAG-NAG-BMA-MAN-MAN-MAN-MAN.72, NAG-NAG-BMA-MAN-MAN-MAN-MAN.72 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.82, B:H.78, B:N.111 Hydrophobic interactions: B:F.114 NAG-NAG-BMA-MAN-MAN.107: 17 residues within 4Å: Chain C: V.57, A.76, H.78, G.80, Y.81, Y.82, Y.90, F.108, N.111, T.113, F.114, D.115, N.119, K.174 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN.109, NAG-NAG-BMA-MAN-MAN-MAN-MAN.109, NAG-NAG-BMA-MAN-MAN-MAN-MAN.109 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Y.82, C:H.78, C:H.78, C:N.111 Hydrophobic interactions: C:F.114

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.37: 3 residues within 4Å: Chain A: G.495, S.496, H.503 No protein-ligand interaction detected (PLIP) NAG-NAG.74: 3 residues within 4Å: Chain B: G.495, S.496, H.503 No protein-ligand interaction detected (PLIP) NAG-NAG.111: 3 residues within 4Å: Chain C: G.495, S.496, H.503 No protein-ligand interaction detected (PLIP)

8 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-4)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-4)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN.112: 3 residues within 4Å: Chain B: F.1241, N.1242, L.1243 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.113: 1 residues within 4Å: Chain C: N.1242 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.114: 3 residues within 4Å: Chain A: F.1236, D.1237, N.1242 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.115: 7 residues within 4Å: Chain A: D.1237, L.1243, N.1247, S.1250 Chain C: N.1247, L.1248, E.1251 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:E.1251 Hydrophobic interactions: A:L.1243 NAG-NAG-BMA-MAN-MAN-MAN-MAN.116: 4 residues within 4Å: Chain B: Y.1245, L.1248 Chain C: L.1246, N.1247 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.117: 2 residues within 4Å: Chain C: D.1274, N.1277 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.118: 3 residues within 4Å: Chain A: N.1277, V.1281 Chain B: Q.1275 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.119: 2 residues within 4Å: Chain B: N.1277, V.1281 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chmielewski, D. et al., A hinge glycan regulates spike bending and impacts coronavirus infectivity. To Be Published

Release Date

2023-10-04

Peptides

Spike glycoprotein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

Spike glycoprotein

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