SMTL ID : 8frk.1

Structure of nsp14 N7-MethylTransferase domain fused with TELSAM bound to SGC8158

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.234, C.259, C.266, H.269 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.234, A:C.259, A:C.266, A:H.269

1 x EOH: ETHANOL(Non-functional Binders)

EOH.2: 2 residues within 4Å: Chain A: A.7, W.27 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.7, A:A.7

1 x MJ7: 5'-S-(4-{[(4'-chloro[1,1'-biphenyl]-3-yl)methyl]amino}butyl)-5'-thioadenosine(Non-covalent)

MJ7.3: 14 residues within 4Å: Chain A: Q.95, G.115, P.117, D.134, A.135, Q.136, L.148, F.149, Y.150, W.167, N.168, C.169, V.171, F.288 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.288 Hydrogen bonds: A:G.115, A:A.135, A:Q.136, A:Y.150, A:Y.150 Water bridges: A:D.134 pi-Stacking: A:W.167

1 x K: POTASSIUM ION(Non-covalent)

K.4: 4 residues within 4Å: Chain A: K.158, F.159, P.175, N.177 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:K.158, H2O.2, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kottur, J. et al., Structures of SARS-CoV-2 N7-methyltransferase with DOT1L and PRMT7 inhibitors provide a platform for new antivirals. Plos Pathog. (2023)

Release Date

2023-07-26

Peptides

Transcription factor ETV6,Guanine-N7 methyltransferase nsp14 chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transcription factor ETV6,Guanine-N7 methyltransferase nsp14 chimera

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