SMTL ID : 8frr.1

Wild-type myocilin olfactomedin domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.27 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: N.177, I.178, R.179, S.182, F.208 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.177, A:N.177, A:R.179, A:S.182

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 8 residues within 4Å: Chain A: Y.128, D.137, N.185, A.186, F.187, I.234, D.235 Ligands: NA.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.137, A:A.186, A:I.234, A:D.235, H2O.5

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 7 residues within 4Å: Chain A: G.83, A.84, V.85, D.137, L.138, D.235 Ligands: CA.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.84, A:L.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saccuzzo, E.G. et al., Competition between inside-out unfolding and pathogenic aggregation in an amyloid-forming beta-propeller. Nat Commun (2024)

Release Date

2024-01-17

Peptides

Myocilin, C-terminal fragment: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myocilin, C-terminal fragment