SMTL ID : 8fs1.3 (2 other biounits)

CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor 11a (YD905)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.74 Å

Oligo State

monomer

Ligands

1 x YB0: 5'-S-{2-[N'-(cyclohexylmethyl)carbamimidamido]ethyl}-N-(3-phenylpropyl)-5'-thioadenosine(Non-covalent)

YB0.1: 14 residues within 4Å: Chain A: I.61, S.62, G.64, D.114, I.115, D.116, C.148, D.149, S.150, P.167, I.169, Y.178, F.200 Chain B: A.8 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.115, A:Y.178 Hydrogen bonds: A:I.115, A:D.149, A:D.149, A:S.150 pi-Stacking: A:Y.178, A:F.200

2 x K: POTASSIUM ION(Non-covalent)

K.2: 5 residues within 4Å: Chain A: G.249, A.250, N.251, V.258, S.259 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:G.249, A:S.259 K.3: 3 residues within 4Å: Chain A: L.365, V.368, D.370 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:L.365, A:D.370

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, J. et al., Comparative Study of Adenosine Analogs as Inhibitors of Protein Arginine Methyltransferases and a Clostridioides difficile- Specific DNA Adenine Methyltransferase. Acs Chem.Biol. (2023)

Release Date

2023-05-10

Peptides

Site-specific DNA-methyltransferase (adenine-specific): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Site-specific DNA-methyltransferase (adenine-specific)

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