SMTL ID : 8ft5.1

Crystal structure of LeuT soaked with Crown-5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.80 Å

Oligo State

monomer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain A: G.20, V.23, G.24, A.351, T.354, S.355 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.355 NA.2: 6 residues within 4Å: Chain A: A.22, G.24, N.27, T.254, N.286 Ligands: LEU.4 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Ligand interactions Hydrogen bonds: A:G.24, A:N.27, A:N.27, A:T.254, A:N.286, L.4

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: Y.151, S.165 Ligand excluded by PLIP

1 x LEU: LEUCINE(Non-covalent)

LEU.4: 14 residues within 4Å: Chain A: N.21, A.22, G.24, L.25, G.26, N.27, Y.108, F.253, T.254, S.256, F.259, S.355, I.359 Ligands: NA.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.253, A:F.259 Hydrogen bonds: A:G.24, A:L.25, A:G.26, A:N.27, A:Y.108, A:S.256, A:S.256

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karasawa, A. et al., Crystallographic characterization of sodium ions in a bacterial leucine/sodium symporter. To be Published

Release Date

2023-11-22

Peptides

Na(+):neurotransmitter symporter (Snf family): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Na(+):neurotransmitter symporter (Snf family)

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