SMTL ID : 8fu3.1

Structure Of Respiratory Syncytial Virus Polymerase with Novel Non-Nucleoside Inhibitor

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-4-mer

Ligands

1 x YBK: 8-methoxy-3-methyl-N-{(2S)-3,3,3-trifluoro-2-[5-fluoro-6-(4-fluorophenyl)-4-(2-hydroxypropan-2-yl)pyridin-2-yl]-2-hydroxypropyl}cinnoline-6-carboxamide(Non-covalent)

YBK.1: 26 residues within 4Å: Chain A: P.1038, G.1254, V.1255, T.1256, S.1257, I.1277, S.1302, L.1373, H.1374, R.1381, F.1385, T.1401, I.1404, N.1405, L.1408, T.1409, Y.1412, D.1414, E.1415, D.1416, I.1417, D.1418, I.1419, V.1420, F.1421, M.1458 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:H.1374, A:I.1404, A:L.1408, A:Y.1412, A:I.1417, A:I.1417, A:V.1420 Hydrogen bonds: A:R.1381, A:N.1405, A:I.1417, A:I.1417, A:I.1417, A:F.1421 pi-Stacking: A:F.1421

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, X. et al., Structural and mechanistic insights into the inhibition of respiratory syncytial virus polymerase by a non-nucleoside inhibitor. Commun Biol (2023)

Release Date

2023-11-01

Peptides

RNA-directed RNA polymerase L: A
Phosphoprotein: BCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

RNA-directed RNA polymerase L

Phosphoprotein

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