SMTL ID : 8fur.2 (1 other biounit)

Crystal structure of human IDO1 with compound 11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-dimer

Ligands

2 x Y9X: N-(4-methylphenyl)-N'-[(1P,2'P)-4-propoxy-5-propyl-2'-(1H-tetrazol-5-yl)[1,1'-biphenyl]-3-yl]urea(Non-covalent)

Y9X.1: 28 residues within 4Å: Chain A: L.127, V.128, Y.129, C.132, V.133, F.166, F.167, S.170, V.173, E.174, F.217, I.220, F.229, L.237, G.265, S.266, A.267, Q.269, S.270, V.272, F.273, L.345, H.349, I.352, V.353, Y.356, I.357, L.387 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:Y.129, A:F.166, A:F.166, A:V.173, A:F.217, A:F.217, A:F.229, A:L.237, A:A.267, A:F.273, A:F.273, A:H.349, A:I.352, A:V.353, A:Y.356, A:I.357 Hydrogen bonds: A:A.267 Water bridges: A:G.265, A:S.266, A:Q.269 Y9X.2: 28 residues within 4Å: Chain B: L.127, V.128, Y.129, C.132, V.133, F.166, F.167, S.170, V.173, E.174, F.217, I.220, F.229, L.237, G.265, S.266, A.267, Q.269, S.270, V.272, F.273, L.345, H.349, I.352, V.353, Y.356, I.357, L.387 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:Y.129, B:F.166, B:F.166, B:V.173, B:F.217, B:F.217, B:F.229, B:L.237, B:A.267, B:F.273, B:H.349, B:I.352, B:V.353, B:Y.356, B:I.357 Hydrogen bonds: B:A.267 Water bridges: B:G.265, B:S.266

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Markwalder, J.A. et al., Synthesis and biological evaluation of biaryl alkyl ethers as inhibitors of IDO1. Bioorg.Med.Chem.Lett. (2023)

Release Date

2023-04-26

Peptides

Indoleamine 2,3-dioxygenase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Indoleamine 2,3-dioxygenase 1

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