SMTL ID : 8fvf.1 (1 other biounit)

Bromodomain of EP300 liganded with CCS-1477

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x JHL: (6S)-1-[3,4-bis(fluoranyl)phenyl]-6-[5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-(4-methoxycyclohexyl)benzimidazol-2-yl]piperidin-2-one(Non-covalent)

JHL.1: 12 residues within 4Å: Chain A: P.23, L.26, P.27, F.28, V.32, I.39, Y.42, Y.84, N.85, R.90, V.91, Y.94 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:P.27, A:F.28, A:I.39, A:Y.84, A:V.91 Hydrogen bonds: A:N.85, A:R.90 Water bridges: A:Y.42 pi-Cation interactions: A:R.90 Halogen bonds: A:P.23

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: W.82 No protein-ligand interaction detected (PLIP)

6 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 1 residues within 4Å: Chain A: D.72 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.72, H2O.2, H2O.3, H2O.3, H2O.4 NI.4: 1 residues within 4Å: Chain A: E.105 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.105, A:E.105, H2O.1, H2O.4 NI.5: 1 residues within 4Å: Chain A: E.16 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.16, A:E.16, H2O.4 NI.6: 3 residues within 4Å: Chain A: Q.21, D.22, E.24 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.24, H2O.3 NI.7: 1 residues within 4Å: Chain A: Q.65 No protein-ligand interaction detected (PLIP) NI.8: 2 residues within 4Å: Chain A: E.103, D.107 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.103, A:D.107, A:D.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schonbrunn, E. et al., Group 3 medulloblastoma transcriptional networks are sensitive to EP300/CBP bromodomain inhibition. To Be Published

Release Date

2024-02-07

Peptides

Histone acetyltransferase p300: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone acetyltransferase p300

Related Entries With Identical Sequence