SMTL ID : 8fvp.1

PCSK9 in complex with an inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PPI- YD5- NLE- 7T2- SER- 7T2- DPP- GLY- NH2: PPI-YD5-NLE-7T2-SER-7T2-DPP-GLY-NH2 inhibitor(Non-covalent)

PPI-YD5-NLE-7T2-SER-7T2-DPP-GLY-NH2.1: 19 residues within 4Å: Chain A: F.150, A.151, Q.152 Chain B: H.74, C.103, Q.104, G.105, N.165, F.166, A.186, V.194, L.196, L.199, G.200, T.201, Q.230, S.231, G.232, T.233 11 PLIP interactions: 9 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:H.74, B:N.165, B:F.166, B:V.194, B:L.196, B:L.199, A:F.150 Hydrogen bonds: B:N.165, B:S.231, B:S.231, A:Q.152

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain B: A.176, A.178, V.181, T.183, C.206, D.208 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, M. et al., pcsk9 in complex with cyclic peptide. To Be Published

Release Date

2024-10-16

Peptides

Proprotein convertase subtilisin/kexin type 9: A
Proprotein convertase subtilisin/kexin type 9: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Proprotein convertase subtilisin/kexin type 9

Proprotein convertase subtilisin/kexin type 9

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