SMTL ID : 8fw5.1

Chimeric HsGATOR1-SpGtr-SpLam complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-mer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 20 residues within 4Å: Chain B: R.99 Chain D: R.10, G.12, S.13, G.14, K.15, S.16, S.17, T.31, R.32, G.35, H.122, K.123, D.125, L.126, S.158, I.159, W.160 Ligands: AF3.2, MG.3 16 PLIP interactions: 14 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:G.12, D:S.13, D:G.14, D:K.15, D:S.16, D:S.17, D:T.31, D:T.31, D:K.123, D:K.123, D:S.158, D:I.159 Salt bridges: D:K.15, D:D.125, B:R.99, B:R.99 GDP.4: 14 residues within 4Å: Chain E: R.12, R.13, S.14, G.15, K.16, S.17, S.18, D.56, H.118, K.119, D.121, S.159, I.160, F.161 16 PLIP interactions: 16 interactions with chain E Hydrogen bonds: E:R.13, E:S.14, E:G.15, E:K.16, E:S.17, E:S.17, E:S.17, E:S.18, E:D.56, E:K.119, E:I.160 Salt bridges: E:R.12, E:R.12, E:K.16, E:K.16, E:D.121

1 x AF3: ALUMINUM FLUORIDE(Non-covalent)

AF3.2: 11 residues within 4Å: Chain B: R.99 Chain D: R.10, S.11, G.12, K.15, S.16, T.37, G.60, Q.61 Ligands: GDP.1, MG.3 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain D: S.16, T.37, D.57 Ligands: GDP.1, AF3.2 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:S.16, D:T.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tettoni, S.D. et al., Structure of the Schizosaccharomyces pombe Gtr-Lam complex reveals evolutionary divergence of mTORC1-dependent amino acid sensing. Structure (2023)

Release Date

2023-07-26

Peptides

GATOR complex protein DEPDC5: A
GATOR complex protein NPRL2: B
GATOR complex protein NPRL3: C
GTP-binding protein Gtr1: D
GTP-binding protein Gtr2: E
Schizosaccharomyces pombe LAM1, Human LAMTOR1 ortholog: F
Schizosaccharomyces pombe LAM2, Human LAMTOR2 ortholog: G
Schizosaccharomyces pombe LAM3, Human LAMTOR3 ortholog: H
Schizosaccharomyces pombe LAM4, Human LAMTOR5 ortholog: I

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

GATOR complex protein DEPDC5

GATOR complex protein NPRL2

GATOR complex protein NPRL3

GTP-binding protein Gtr1

GTP-binding protein Gtr2

Schizosaccharomyces pombe LAM1, Human LAMTOR1 ortholog

Schizosaccharomyces pombe LAM2, Human LAMTOR2 ortholog

Schizosaccharomyces pombe LAM3, Human LAMTOR3 ortholog

Schizosaccharomyces pombe LAM4, Human LAMTOR5 ortholog