SMTL ID : 8fwo.1

Crystal structure of SARS-CoV-2 papain-like protease

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: G.164, D.165, Y.265, Y.274 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.164 Water bridges: A:V.166 GOL.2: 2 residues within 4Å: Chain A: S.86, H.90 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.90

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 5 residues within 4Å: Chain A: H.74, N.129, P.130, Q.175, H.176 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.129 Salt bridges: A:H.74, A:H.176

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain A: C.190, C.193, C.225, C.227 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.190, A:C.193, A:C.225, A:C.227

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain A: K.127, F.128, Q.134 Ligand excluded by PLIP CL.6: 6 residues within 4Å: Chain A: T.11, V.12, D.13, N.16, H.18, E.68 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain A: S.50 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bezerra, E.H.S. et al., Crystal structure of SARS-CoV-2 papain-like protease. To Be Published

Release Date

2024-01-31

Peptides

Papain-like protease nsp3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Papain-like protease nsp3