SMTL ID : 8fwp.1

Crystal Structure of CDC10 - CDC3 heterocomplex from Saccharomyces cerevisiae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: G.19, L.20, G.21, K.22, S.23, T.24, S.37, K.157, D.159, V.212, G.213, R.228 Chain B: T.156, H.158, I.186, E.191 25 PLIP interactions: 21 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:G.19, A:L.20, A:G.21, A:K.22, A:S.23, A:S.23, A:T.24, A:T.24, A:K.157, A:G.213, A:R.228, B:I.186, B:E.191 Water bridges: A:S.18, A:K.22, A:A.38, A:A.38, A:K.157, A:R.228, A:R.228, A:R.228 Salt bridges: A:K.22, A:D.159, B:H.158, B:H.158

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 17 residues within 4Å: Chain A: K.132, T.160, E.165 Chain B: D.24, G.25, I.26, G.27, K.28, T.29, T.30, K.183, D.185, I.239, G.240, R.256, Y.258 Ligands: MG.3 22 PLIP interactions: 20 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.24, B:G.25, B:I.26, B:G.27, B:K.28, B:T.29, B:T.29, B:T.30, B:T.30, B:K.183, B:G.240, B:R.256, B:R.256, B:Y.258, A:T.160 Water bridges: B:T.29, B:E.42 Salt bridges: B:K.28, B:K.28, B:D.185, A:K.132 pi-Cation interactions: B:R.256

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain B: T.29, E.42 Ligands: GTP.2 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:T.29, H2O.5, H2O.5, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marques da Silva, R. et al., A key piece of the puzzle: The central tetramer of the Saccharomyces cerevisiae septin protofilament and its implications for self-assembly. J.Struct.Biol. (2023)

Release Date

2023-07-05

Peptides

Cell division control protein 10: A
Cell division control protein 3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cell division control protein 10

Cell division control protein 3