SMTL ID : 8fxd.3 (2 other biounits)

Rubrerythrin from B. pseudomallei: manganese-bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

homo-dimer

Ligands

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 7 residues within 4Å: Chain A: R.159, K.162, A.163, G.166 Chain B: D.70, I.71, L.74 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.159, A:R.159, A:K.162 PEG.4: 4 residues within 4Å: Chain A: M.126, M.130 Chain B: N.41, Y.44 No protein-ligand interaction detected (PLIP) PEG.5: 9 residues within 4Å: Chain B: K.34, E.94, A.95, V.96, G.97, G.102, L.103, P.104, F.105 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.94, B:G.102

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 7 residues within 4Å: Chain A: E.119, E.153, H.156 Chain B: Y.56, T.78, E.82 Ligands: MN.7 5 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:E.82, A:E.119, A:E.153, A:H.156, H2O.7 MN.3: 5 residues within 4Å: Chain A: E.49, E.82, H.85 Chain B: E.153 Ligands: MN.6 5 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:E.49, A:E.82, A:H.85, B:E.153, H2O.1 MN.6: 7 residues within 4Å: Chain A: Y.56, T.78, E.82 Chain B: E.119, E.153, H.156 Ligands: MN.3 5 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:E.82, B:E.119, B:E.153, B:H.156, H2O.2 MN.7: 5 residues within 4Å: Chain A: E.153 Chain B: E.49, E.82, H.85 Ligands: MN.2 5 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:E.49, B:E.82, B:H.85, A:E.153, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Monteiro, D.C.F. et al., Rubrerythrin from B. pseudomallei: manganese-bound. To Be Published

Release Date

2024-02-07

Peptides

Rubrerythrin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
Y

B
5

Rubrerythrin

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