SMTL ID : 8fym.3 (3 other biounits)

Crystal structure of Fab235 in complex with MPER peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: Y.31, Y.38, Y.98, N.99 Chain B: Y.107 Ligands: CL.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.99

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain B: S.106, Y.107 Chain C: N.9, N.12 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain B: S.105 Ligands: GOL.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., Inadequate structural constraint on Fab approach rather than paratope elicitation limits HIV-1 MPER vaccine utility. Nat Commun (2023)

Release Date

2023-10-11

Peptides

Fab235, L chain: A
Fab235, H chain: B
ALA-SER-LEU-TRP-ASN-TRP-PHE-ASN-ILE-THR-ASN-TRP-LEU-TRP-TYR-ILE-LYS-LYS-LYS: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Fab235, L chain

Fab235, H chain

ALA-SER-LEU-TRP-ASN-TRP-PHE-ASN-ILE-THR-ASN-TRP-LEU-TRP-TYR-ILE-LYS-LYS-LYS

Related Entries With Identical Sequence