SMTL ID : 8g04.1

Structure of signaling thrombopoietin-MPL receptor complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-mer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain B: N.92 No protein-ligand interaction detected (PLIP) NAG.2: 3 residues within 4Å: Chain B: K.272, N.273, H.328 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:K.272 Hydrogen bonds: B:H.328 NAG.3: 3 residues within 4Å: Chain B: L.271, N.333, D.334 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:D.334 Hydrogen bonds: B:N.333 NAG.7: 1 residues within 4Å: Chain C: N.92 No protein-ligand interaction detected (PLIP) NAG.8: 3 residues within 4Å: Chain C: K.272, N.273, H.328 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:K.272 NAG.9: 4 residues within 4Å: Chain C: L.271, K.272, S.331, N.333 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:L.271, C:L.271, C:N.333

6 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.4: 3 residues within 4Å: Chain B: R.232, S.243, W.244 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.232, B:R.232, B:S.243 MAN.5: 3 residues within 4Å: Chain B: R.145, S.246, W.247 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.145, B:R.145, B:W.247 MAN.6: 3 residues within 4Å: Chain B: Q.265, P.448, W.449 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.265, B:R.437, B:W.449 MAN.10: 2 residues within 4Å: Chain C: S.243, W.244 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.243 MAN.11: 3 residues within 4Å: Chain C: R.145, S.246, W.247 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.145, C:R.145, C:W.247 MAN.12: 1 residues within 4Å: Chain C: W.449 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsutsumi, N. et al., Structure of the thrombopoietin-MPL receptor complex is a blueprint for biasing hematopoiesis. Cell(Cambridge,Mass.) (2023)

Release Date

2023-08-30

Peptides

Thrombopoietin: A
Thrombopoietin receptor: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Thrombopoietin

Thrombopoietin receptor