SMTL ID : 8g0i.1

High Affinity nanobodies against GFP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: P.57, W.58, P.59, Y.142 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: K.130 Chain B: E.50 Ligands: NA.4 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 6 residues within 4Å: Chain A: K.106 Chain B: K.102, K.103, S.105, G.107, D.108 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.103, B:G.107, A:K.106 NA.4: 6 residues within 4Å: Chain A: K.130 Chain B: E.50, S.51, G.64, D.65 Ligands: CL.2 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ketaren, N.E. et al., Unique Binding and Stabilization Mechanisms Employed By and Engineered Into Nanobodies. Biorxiv (2023)

Release Date

2024-03-20

Peptides

Green fluorescent protein: A
LaG24 Nanobody: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Green fluorescent protein

LaG24 Nanobody

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