SMTL ID : 8g0m.1

Structure of complex between TV6.6 and CD98hc ECD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- NAG- GAL- MAN- FUC: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL-MAN-FUC.1: 18 residues within 4Å: Chain B: S.19, F.21, F.23, P.24, P.25, K.26, D.29, E.38, V.39, T.40, V.42, V.44, D.45, Q.75, Y.76, N.77, T.79, R.81 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.26, B:K.26, B:E.38, B:E.38, B:K.26

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: Y.101, G.103, E.104, E.274 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.103 EDO.4: 4 residues within 4Å: Chain A: R.36, Y.39, W.280, V.298 No protein-ligand interaction detected (PLIP) EDO.5: 5 residues within 4Å: Chain B: P.126, Q.127, V.128, Y.129, K.219 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.128, B:K.219 EDO.6: 4 residues within 4Å: Chain B: E.210, A.211, L.212, H.213 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.210 Water bridges: B:N.214 EDO.7: 5 residues within 4Å: Chain B: E.52, K.54, S.104, N.105, K.106 No protein-ligand interaction detected (PLIP)

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 10 residues within 4Å: Chain A: A.236, Q.237, L.239, R.240, I.261, G.262, N.295, M.296, Q.301, L.308 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.301

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chew, K.S. et al., CD98hc is a target for brain delivery of biotherapeutics. Nat Commun (2023)

Release Date

2023-10-18

Peptides

4F2 cell-surface antigen heavy chain: A
TV 6.6 Fc fragment: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

4F2 cell-surface antigen heavy chain

TV 6.6 Fc fragment