- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ACO: ACETYL COENZYME *A(Non-covalent)
- 4 x OAA: OXALOACETATE ION(Non-covalent)
OAA.2: 6 residues within 4Å:- Chain A: H.900, V.904, F.935, R.986, R.1065
- Ligands: ACO.1
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:H.900, A:R.986
- Water bridges: A:R.1065
- Salt bridges: A:H.900, A:H.900, A:R.1065
OAA.3: 7 residues within 4Å:- Chain A: R.1085
- Chain B: H.900, V.904, F.935, F.1061, R.1065
- Ligands: ACO.6
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:H.900, B:V.904
- Salt bridges: B:H.900, B:H.900, B:R.1065, A:R.1085
OAA.9: 6 residues within 4Å:- Chain C: H.900, V.904, F.935, F.1061, R.1065
- Ligands: ACO.8
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:H.900
- Salt bridges: C:H.900, C:H.900, C:R.976, C:R.1065
OAA.15: 7 residues within 4Å:- Chain C: R.1085
- Chain D: H.900, V.904, F.935, R.986, R.1065
- Ligands: ACO.14
9 PLIP interactions:8 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:R.1065, D:R.1065
- Water bridges: D:R.986, D:R.986
- Salt bridges: D:H.900, D:H.900, D:R.986, D:R.1065, C:R.1085
- 2 x UNL: UNKNOWN LIGAND
- 3 x Q5B: (3S)-citryl-Coenzyme A(Non-covalent)
Q5B.5: 30 residues within 4Å:- Chain B: G.261, A.280, S.308, G.309, A.345, N.346, F.347, T.348, R.379, Q.505, F.533, F.572, S.574, R.576, S.577, I.597, E.599, A.624, T.625, V.626, G.665
- Chain D: K.964, L.969, I.970, I.973, K.1017, K.1018, L.1021
- Ligands: PO4.7, ACO.14
23 PLIP interactions:17 interactions with chain B, 6 interactions with chain D- Hydrophobic interactions: B:F.347, B:F.572
- Hydrogen bonds: B:G.261, B:S.308, B:G.309, B:S.343, B:N.346, B:N.346, B:F.347, B:T.348, B:T.348, B:S.574, B:S.574, B:R.576, B:E.599, D:I.970, D:I.970
- Salt bridges: B:R.379, B:R.576, D:K.964, D:K.1017, D:K.1018, D:K.1018
Q5B.12: 31 residues within 4Å:- Chain A: K.964, L.969, I.970, I.973, K.1017, K.1018, L.1021
- Chain C: A.280, S.308, G.309, S.343, A.345, N.346, F.347, T.348, R.379, Q.505, F.533, F.572, S.574, R.576, S.577, I.597, E.599, A.624, T.625, V.626, G.664, G.665
- Ligands: ACO.1, PO4.13
24 PLIP interactions:18 interactions with chain C, 6 interactions with chain A- Hydrophobic interactions: C:F.572, C:E.599
- Hydrogen bonds: C:S.308, C:G.309, C:S.343, C:N.346, C:N.346, C:F.347, C:T.348, C:T.348, C:R.379, C:S.574, C:S.577, C:S.577, C:S.577, C:E.599, A:I.970, A:I.970
- Salt bridges: C:R.379, C:R.576, A:K.964, A:K.1017, A:K.1018, A:K.1018
Q5B.16: 31 residues within 4Å:- Chain B: K.964, L.969, I.970, I.973, K.1017, K.1018, L.1021
- Chain D: G.261, A.280, S.308, G.309, A.345, N.346, F.347, T.348, R.379, Q.505, F.533, F.572, S.574, R.576, S.577, I.597, A.598, E.599, A.624, T.625, V.626, G.665
- Ligands: ACO.6, PO4.18
20 PLIP interactions:6 interactions with chain B, 14 interactions with chain D- Hydrogen bonds: B:I.970, B:I.970, D:G.309, D:N.346, D:N.346, D:F.347, D:T.348, D:T.348, D:S.574, D:S.577, D:S.577, D:S.577, D:I.597
- Salt bridges: B:K.964, B:K.1017, B:K.1018, B:K.1018, D:R.379, D:R.576
- Hydrophobic interactions: D:E.599
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.7: 9 residues within 4Å:- Chain B: G.281, G.282, G.283, S.308, S.663, G.664, G.665, H.760
- Ligands: Q5B.5
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:G.282, B:G.283, B:S.308, B:S.308, B:G.664, B:G.665
- Salt bridges: B:H.760
PO4.13: 9 residues within 4Å:- Chain C: G.281, G.282, G.283, S.308, S.663, G.664, G.665, H.760
- Ligands: Q5B.12
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:G.282, C:G.283, C:S.308, C:G.664, C:G.665
- Salt bridges: C:H.760
PO4.18: 9 residues within 4Å:- Chain D: G.281, G.282, G.283, S.308, S.663, G.664, G.665, H.760
- Ligands: Q5B.16
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:G.282, D:G.283, D:S.308, D:G.664, D:G.665
- Salt bridges: D:H.760
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.10: 18 residues within 4Å:- Chain C: V.56, K.58, I.63, K.64, R.65, R.66, G.67, K.68, V.74, P.109, F.110, V.111, H.113, V.140, N.203, P.204, L.215, D.216
12 PLIP interactions:12 interactions with chain C- Hydrogen bonds: C:K.58, C:I.63, C:R.65, C:R.66, C:G.67, C:P.109, C:V.111, C:H.113, C:D.216
- Salt bridges: C:R.66, C:K.68, C:K.68
ADP.17: 16 residues within 4Å:- Chain D: V.56, K.58, K.64, R.65, R.66, G.67, K.68, V.74, E.108, P.109, F.110, V.111, H.113, N.203, L.215, D.216
12 PLIP interactions:12 interactions with chain D- Hydrogen bonds: D:R.65, D:R.65, D:R.66, D:G.67, D:P.109, D:V.111, D:H.113, D:D.216, D:D.216
- Salt bridges: D:K.58, D:R.66, D:K.68
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wei, X. et al., Allosteric role of the citrate synthase homology domain of ATP citrate lyase. Nat Commun (2023)
- Release Date
- 2023-05-10
- Peptides
- ATP-citrate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ACO: ACETYL COENZYME *A(Non-covalent)
- 4 x OAA: OXALOACETATE ION(Non-covalent)
- 2 x UNL: UNKNOWN LIGAND
- 3 x Q5B: (3S)-citryl-Coenzyme A(Non-covalent)
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wei, X. et al., Allosteric role of the citrate synthase homology domain of ATP citrate lyase. Nat Commun (2023)
- Release Date
- 2023-05-10
- Peptides
- ATP-citrate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D