SMTL ID : 8g1h.1

Ancestral protein AncTh of Phosphomethylpirimidine kinases family

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.178 EDO.4: 3 residues within 4Å: Chain A: R.193, F.195, S.196 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.196 EDO.5: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.178 EDO.8: 3 residues within 4Å: Chain B: R.193, F.195, S.196 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.196

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 3 residues within 4Å: Chain A: G.9, G.17, Q.42 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.42, A:Q.42 Water bridges: A:G.9 PO4.3: 1 residues within 4Å: Chain A: R.49 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.49 PO4.6: 3 residues within 4Å: Chain B: G.9, G.17, Q.42 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.42, B:Q.42 Water bridges: B:G.9 PO4.7: 1 residues within 4Å: Chain B: R.49 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perez, M. et al., Ancestral protein AncTh of Phosphomethylpyrimidine kinases. To Be Published

Release Date

2024-02-07

Peptides

Phosphomethylpyrimidine Kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Phosphomethylpyrimidine Kinase