SMTL ID : 8g1l.1

Lectin domain of Aap (Staphylococcus epidermidis Accumulation Associated Protein)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.06 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 8 residues within 4Å: Chain A: R.111, D.113, G.115, Y.116, Y.117, D.123, Q.128, Y.136 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.113, A:D.113, A:G.115, H2O.2, H2O.7

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: Q.192, T.206, L.207, S.208 No protein-ligand interaction detected (PLIP) MG.3: 8 residues within 4Å: Chain A: V.66, A.67, N.68, F.175, G.177, K.179, N.181, Y.198 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:V.66, A:G.177, A:Y.198 MG.4: 6 residues within 4Å: Chain A: T.167, T.168, N.169, H.176, Q.178, K.179 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.167, A:N.169

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 7 residues within 4Å: Chain A: N.35, Q.38, P.39, T.44, Q.226, S.237, G.238 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.226, A:S.237 Water bridges: A:Q.38 NA.6: 3 residues within 4Å: Chain A: T.167, T.168, N.169 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.168, A:T.168, A:N.169 Water bridges: A:N.169

1 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.7: 6 residues within 4Å: Chain A: Q.126, K.127, R.134, P.156, S.157, F.160 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maciag, J.J. et al., Mechanistic basis of staphylococcal interspecies competition for skin colonization. To Be Published

Release Date

2024-02-14

Peptides

Accumulation associated protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Accumulation associated protein