SMTL ID : 8g27.1

Hybrid aspen cellulose synthase-8 bound to UDP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

3 x BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-BGC.1: 8 residues within 4Å: Chain B: Q.507, N.522, V.542, T.687, D.689, I.690, W.731, T.766 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.542 BGC-BGC.2: 9 residues within 4Å: Chain C: N.522, V.542, T.687, D.689, I.690, W.731, S.735, T.766, Y.769 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:T.687, C:D.689, C:S.735 BGC-BGC.3: 7 residues within 4Å: Chain A: Q.507, N.522, V.542, T.687, D.689, I.690, W.731 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.687, A:D.689

3 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.4: 9 residues within 4Å: Chain A: S.271, T.272, V.273, E.278, D.307, K.448, K.449, D.473, C.474 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.271, A:D.307, A:K.449, A:C.474 UDP.5: 9 residues within 4Å: Chain B: S.271, T.272, V.273, D.307, K.448, K.449, C.474, Q.727, R.730 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.273 Hydrogen bonds: B:S.271, B:D.307, B:D.307 Salt bridges: B:R.730, B:R.730 UDP.6: 10 residues within 4Å: Chain C: S.271, T.272, V.273, E.278, D.307, K.448, K.449, D.473, C.474, R.730 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:E.278, C:D.307, C:D.307, C:D.473, C:D.473

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Verma, P. et al., Insights into substrate coordination and glycosyl transfer of poplar cellulose synthase-8. Biorxiv (2023)

Release Date

2023-03-01

Peptides

Cellulose synthase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
I

C
C

Membrane

We predict this structure to be a membrane protein.
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Cellulose synthase

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