SMTL ID : 8g2r.1

CRYSTAL STRUCTURE OF THE KPC-2 D179N VARIANT IN COMPLEX WITH AVIBACTAM

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.28 Å

Oligo State

monomer

Ligands

1 x NXL: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide(Covalent)

NXL.1: 13 residues within 4Å: Chain A: C.45, S.46, K.49, W.81, S.106, N.108, E.142, N.146, T.192, K.210, T.211, G.212, T.213 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.81 Hydrogen bonds: A:S.46, A:S.106, A:N.108, A:N.146, A:T.211, A:T.213, A:T.213 Water bridges: A:K.49, A:K.49, A:L.143, A:T.192, A:T.192, A:K.210 Salt bridges: A:K.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alsenani, T.A. et al., Exploring avibactam and relebactam inhibition of Klebsiella pneumoniae carbapenemase D179N variant: role of the Omega loop-held deacylation water. Antimicrob.Agents Chemother. (2023)

Release Date

2023-08-09

Peptides

Carbapenem-hydrolyzing beta-lactamase KPC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carbapenem-hydrolyzing beta-lactamase KPC

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