SMTL ID : 8g5a.1

X-31 hemagglutinin in complex with FL-1061 Fab

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: A.498, E.501, S.502, N.505, T.507 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.498, A:N.505, A:T.507 NAG.2: 2 residues within 4Å: Chain A: P.43, N.44 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.44 NAG.3: 4 residues within 4Å: Chain A: N.60, T.62, T.340, N.400 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.400 NAG.4: 5 residues within 4Å: Chain A: Q.102, N.103, E.141, F.142, I.143 No protein-ligand interaction detected (PLIP) NAG.5: 5 residues within 4Å: Chain B: A.498, E.501, S.502, N.505, T.507 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.498, B:N.505, B:T.507 NAG.6: 2 residues within 4Å: Chain B: P.43, N.44 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.44 NAG.7: 4 residues within 4Å: Chain B: N.60, T.62, T.340, N.400 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.400 NAG.8: 5 residues within 4Å: Chain B: Q.102, N.103, E.141, F.142, I.143 No protein-ligand interaction detected (PLIP) NAG.9: 5 residues within 4Å: Chain C: A.498, E.501, S.502, N.505, T.507 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:A.498, C:N.505, C:T.507 NAG.10: 2 residues within 4Å: Chain C: P.43, N.44 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.44 NAG.11: 4 residues within 4Å: Chain C: N.60, T.62, T.340, N.400 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.400 NAG.12: 5 residues within 4Å: Chain C: Q.102, N.103, E.141, F.142, I.143 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Windsor, I.W. et al., Antibodies elicited by a hyperglycoslated immunogen. To Be Published

Release Date

2024-02-21

Peptides

Hemagglutinin: ABC
FL-1086 Fab heavy chain: DEF
FL-1086 light chain: GHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
H

E
I

F
J

G
L

H
M

I
N

Hemagglutinin

FL-1086 Fab heavy chain

FL-1086 light chain