SMTL ID : 8g5e.1

Crystal Structure of SETDB1 Tudor domain in complex with UNC6535

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x YOH: N~4~-[6-(dimethylamino)hexyl]-N~2~-[5-(dimethylamino)pentyl]-6,7-dimethoxyquinazoline-2,4-diamine(Non-covalent)

YOH.1: 17 residues within 4Å: Chain A: Y.90, K.91, D.92, Y.99, F.119, D.121, Y.123, W.180, W.185, F.201, D.204, R.206, C.207, E.208, W.209 Ligands: UNX.2, UNX.8 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.90, A:Y.123, A:Y.123, A:F.201, A:E.208 Hydrogen bonds: A:Y.90, A:C.207 Salt bridges: A:D.121, A:D.204 pi-Cation interactions: A:W.180, A:W.180

7 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 3 residues within 4Å: Chain A: R.198, C.207 Ligands: YOH.1 No protein-ligand interaction detected (PLIP) UNX.3: 1 residues within 4Å: Chain A: Y.15 No protein-ligand interaction detected (PLIP) UNX.4: 3 residues within 4Å: Chain A: K.30, R.31, S.62 No protein-ligand interaction detected (PLIP) UNX.5: 2 residues within 4Å: Chain A: G.93, N.94 No protein-ligand interaction detected (PLIP) UNX.6: 3 residues within 4Å: Chain A: S.125, Y.126, L.196 No protein-ligand interaction detected (PLIP) UNX.7: 3 residues within 4Å: Chain A: T.128, S.130, E.131 No protein-ligand interaction detected (PLIP) UNX.8: 2 residues within 4Å: Chain A: R.206 Ligands: YOH.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beldar, S. et al., Crystal Structure of SETDB1 Tudor domain in complex with UNC6535. To be published

Release Date

2023-02-22

Peptides

Histone-lysine N-methyltransferase SETDB1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase SETDB1

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