SMTL ID : 8g6c.1

GTP Cyclohydrolase-IB with manganese

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.82 Å

Oligo State

homo-tetramer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: C.188, H.200, I.286 Chain D: E.242 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain D Metal complexes: A:C.188, A:H.200, D:E.242 MN.7: 3 residues within 4Å: Chain B: C.188, H.200 Chain C: E.242 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Metal complexes: B:C.188, B:H.200, C:E.242 MN.12: 4 residues within 4Å: Chain B: E.242 Chain C: C.188, H.200, I.286 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain C Metal complexes: B:E.242, C:C.188, C:H.200 MN.18: 3 residues within 4Å: Chain A: E.242 Chain D: C.188, H.200 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain A Metal complexes: D:C.188, D:H.200, A:E.242

18 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: N.288 Chain B: R.67 Chain D: D.160, E.162, L.181, H.205 Ligand excluded by PLIP EDO.3: 3 residues within 4Å: Chain A: E.78, Q.80, L.158 Ligand excluded by PLIP EDO.4: 4 residues within 4Å: Chain A: R.223, E.226, E.227, E.232 Ligand excluded by PLIP EDO.5: 1 residues within 4Å: Chain A: R.103 Ligand excluded by PLIP EDO.6: 5 residues within 4Å: Chain A: F.255, E.257 Chain B: G.98, T.99, M.101 Ligand excluded by PLIP EDO.8: 4 residues within 4Å: Chain A: G.98, T.99 Chain B: F.255, E.257 Ligand excluded by PLIP EDO.9: 4 residues within 4Å: Chain B: P.57, H.91, P.93, A.94 Ligand excluded by PLIP EDO.10: 2 residues within 4Å: Chain C: F.283 Ligands: EDO.11 Ligand excluded by PLIP EDO.11: 9 residues within 4Å: Chain B: Q.202, R.203, F.283, S.285 Chain C: Q.202, R.203, F.283, S.285 Ligands: EDO.10 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain B: D.160, E.162, L.181, H.205 Chain C: N.288 Chain D: R.67 Ligand excluded by PLIP EDO.14: 3 residues within 4Å: Chain C: E.78, Q.80, L.158 Ligand excluded by PLIP EDO.15: 4 residues within 4Å: Chain C: R.223, E.226, E.227, E.232 Ligand excluded by PLIP EDO.16: 1 residues within 4Å: Chain C: R.103 Ligand excluded by PLIP EDO.17: 5 residues within 4Å: Chain C: F.255, E.257 Chain D: G.98, T.99, M.101 Ligand excluded by PLIP EDO.19: 4 residues within 4Å: Chain C: G.98, T.99 Chain D: F.255, E.257 Ligand excluded by PLIP EDO.20: 4 residues within 4Å: Chain D: P.57, H.91, P.93, A.94 Ligand excluded by PLIP EDO.21: 2 residues within 4Å: Chain A: F.283 Ligands: EDO.22 Ligand excluded by PLIP EDO.22: 9 residues within 4Å: Chain A: Q.202, R.203, F.283, S.285 Chain D: Q.202, R.203, F.283, S.285 Ligands: EDO.21 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Combatting melioidosis with chemical synthetic lethality. To Be Published

Release Date

2024-02-21

Peptides

GTP cyclohydrolase FolE2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

GTP cyclohydrolase FolE2

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