SMTL ID : 8g7h.1

Crystal Structure of FosB from Bacillus cereus with Zinc and (1-hydroxypropan-2-yl)phosphonic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

homo-dimer

Ligands

2 x YRQ: [(2S)-1-hydroxypropan-2-yl]phosphonic acid(Non-covalent)

YRQ.1: 12 residues within 4Å: Chain A: Y.64, H.66, R.94, Y.105, E.115, R.124 Chain B: H.7, Y.39, W.46, A.48, N.50 Ligands: ZN.6 9 PLIP interactions: 3 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:W.46, B:A.48 Water bridges: B:N.50, A:R.96, A:S.103 Hydrogen bonds: A:Y.64, A:R.94, A:R.124, A:R.124 YRQ.8: 12 residues within 4Å: Chain A: H.7, Y.39, W.46, A.48, N.50 Chain B: Y.64, H.66, R.94, Y.105, E.115, R.124 Ligands: ZN.13 11 PLIP interactions: 8 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Y.64, B:R.94, B:Y.105, B:R.124, B:R.124, A:Y.39, A:N.50 Water bridges: B:R.94, B:R.96, B:S.103 Hydrophobic interactions: A:W.46

7 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 6 residues within 4Å: Chain A: G.34, R.35, K.36, L.37 Chain B: H.134, M.135 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.35, A:K.36, A:L.37, B:H.134 FMT.3: 5 residues within 4Å: Chain A: R.33, G.34, R.35 Chain B: H.134, T.136 No protein-ligand interaction detected (PLIP) FMT.4: 1 residues within 4Å: Chain A: E.95 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.96 FMT.5: 5 residues within 4Å: Chain A: N.41, G.44, V.45, W.46 Chain B: L.121 1 PLIP interactions: 1 interactions with chain A Water bridges: A:W.46 FMT.9: 4 residues within 4Å: Chain B: E.16, I.19, E.20, R.33 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.20, B:R.33, B:R.33 FMT.10: 5 residues within 4Å: Chain B: R.94, D.97, D.100, Y.127, K.132 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.97, B:D.100, B:Y.127, B:K.132 Water bridges: B:R.94, B:R.94, B:D.97 FMT.11: 1 residues within 4Å: Chain B: D.97 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.97 Water bridges: B:D.97

2 x ZN: ZINC ION(Non-covalent)

ZN.6: 5 residues within 4Å: Chain A: H.66, Y.105, E.115 Chain B: H.7 Ligands: YRQ.1 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Metal complexes: A:H.66, A:E.115, B:H.7 ZN.13: 5 residues within 4Å: Chain A: H.7 Chain B: H.66, Y.105, E.115 Ligands: YRQ.8 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Metal complexes: B:H.66, B:E.115, A:H.7

2 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.7: 2 residues within 4Å: Chain A: N.3 Chain B: E.72 No protein-ligand interaction detected (PLIP) MG.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.12: 5 residues within 4Å: Chain B: R.57, Y.61, P.109, D.110, G.111 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.57, B:P.109 Water bridges: B:D.110, B:G.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Travis, S. et al., Identification and analysis of small molecule inhibitors of FosB from Staphylococcus aureus. Rsc Med Chem (2023)

Release Date

2023-06-14

Peptides

Metallothiol transferase FosB: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Metallothiol transferase FosB

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