SMTL ID : 8g8a.2 (1 other biounit)

Crystal structure of DH1317.8 Fab in complex with HIV proximal MPER peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: E.23, A.24, S.25, S.75, N.77 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.77

4 x NA: SODIUM ION(Non-functional Binders)

NA.2: 7 residues within 4Å: Chain A: Y.107, Y.108, M.109 Chain B: A.34, Y.36, Q.89, T.91 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.36, A:Y.107 NA.3: 7 residues within 4Å: Chain A: H.173 Chain B: N.140, T.166, D.169, T.174, Y.175, S.176 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.166, B:T.174, A:H.173 NA.4: 7 residues within 4Å: Chain B: P.80, V.83, I.108, Q.168, D.169, S.170, S.173 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.173, B:S.173 NA.5: 3 residues within 4Å: Chain B: Q.162, T.180, T.182 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.162, B:T.180, B:T.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Williams, W.B. et al., Vaccine induction of heterologous HIV-1-neutralizing antibody B cell lineages in humans. Cell (2024)

Release Date

2024-05-22

Peptides

DH1317.8 heavy chain: A
DH1317.8 light chain: B
Env polyprotein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
P

DH1317.8 heavy chain

DH1317.8 light chain

Env polyprotein

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