SMTL ID : 8gc8.1

Bruton's tyrosine kinase L528W mutant in complex with 5-(piperidin-1-yl)-3-{[4-(piperidin-4-yl)phenyl]amino}pyrazine-2-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x YXJ: 5-(piperidin-1-yl)-3-[4-(piperidin-4-yl)anilino]pyrazine-2-carboxamide(Non-covalent)

YXJ.1: 17 residues within 4Å: Chain A: L.20, G.21, T.22, G.23, V.28, A.40, K.42, V.70, T.86, E.87, Y.88, M.89, A.90, N.91, G.92, W.140 Ligands: EDO.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.20, A:L.20, A:Y.88 Hydrogen bonds: A:E.87, A:M.89, A:M.89

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: K.42, V.70, T.86, W.140, S.150, D.151 Ligands: YXJ.1, EDO.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.42, A:T.86, A:S.150, A:D.151 Water bridges: A:D.151 EDO.3: 5 residues within 4Å: Chain A: Y.210, E.211, R.212, F.213, Y.229 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.212 Water bridges: A:Y.210, A:E.211, A:Y.229 EDO.4: 3 residues within 4Å: Chain A: R.102, F.105, Q.106 No protein-ligand interaction detected (PLIP) EDO.5: 8 residues within 4Å: Chain A: R.132, D.133, L.134, W.175, S.176, F.186, S.190, A.194 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.134 Water bridges: A:R.132, A:D.133, A:L.134, A:S.190, A:S.190 EDO.6: 8 residues within 4Å: Chain A: K.42, M.61, V.70, Q.71, L.72, T.86, S.150 Ligands: EDO.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.42, A:L.72, A:S.150, A:S.150 Water bridges: A:V.70, A:D.151, A:D.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Montoya, S. et al., Kinase-impaired BTK mutations are susceptible to clinical-stage BTK and IKZF1/3 degrader NX-2127. Science (2024)

Release Date

2024-01-31

Peptides

Tyrosine-protein kinase BTK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase BTK