SMTL ID : 8gcg.1

MDM2 bound to inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x VAL- TRP- PHE- GLY- 01- FX9- 02- 03- NH2: macrocyclic peptide inhibitor(Non-covalent)

VAL-TRP-PHE-GLY-01-FX9-02-03-NH2.1: 21 residues within 4Å: Chain A: L.38, F.39, L.41, G.42, Q.43, I.45, M.46, Y.51, E.53, Q.56, H.57, I.58, V.59, F.75, V.77, K.78, E.79, H.80, I.83, Y.84, I.87 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.38, A:F.39, A:I.45, A:Y.51, A:Y.51, A:Y.51, A:V.59, A:V.77, A:V.77, A:I.83, A:I.83, A:Y.84 Hydrogen bonds: A:Q.43, A:H.80 Water bridges: A:F.39, A:Q.43 pi-Stacking: A:H.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silvestri, A.P. et al., DNA-Encoded Macrocyclic Peptide Libraries Enable the Discovery of a Neutral MDM2-p53 Inhibitor. Acs Med.Chem.Lett. (2023)

Release Date

2024-10-23

Peptides

E3 ubiquitin-protein ligase Mdm2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase Mdm2

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