SMTL ID : 8gdx.1

Crystal structure of JADE1 PZP domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.74 Å

Oligo State

monomer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.7, C.10, H.32, C.35 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.10, A:H.32, A:C.35 ZN.2: 5 residues within 4Å: Chain A: C.59, C.62, H.80, C.83, T.141 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.59, A:C.62, A:H.80, A:C.83 ZN.3: 4 residues within 4Å: Chain A: C.116, C.119, H.139, C.142 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.116, A:C.119, A:H.139, A:C.142 ZN.4: 4 residues within 4Å: Chain A: C.129, C.134, C.166, H.169 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.129, A:C.134, A:C.166, A:H.169 ZN.5: 4 residues within 4Å: Chain A: C.24, C.27, C.48, C.51 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.24, A:C.27, A:C.48, A:C.51

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 5 residues within 4Å: Chain A: R.73, T.102, K.103, V.104, S.105 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.103, A:V.104, A:S.105 GOL.7: 4 residues within 4Å: Chain A: P.88, R.111, I.127, Q.128 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.111, A:R.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gaurav, N. et al., Guiding the HBO1 complex function through the JADE subunit. Nat.Struct.Mol.Biol. (2024)

Release Date

2024-03-13

Peptides

Protein Jade-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein Jade-1