SMTL ID : 8gem.1

Crystal structure of human cellular retinol binding protein 1 in complex with N-ethyl-N-({3-[1-(4-methylphenyl)cyclopentyl]-1,2,4-oxadiazol-5-yl}methyl)-2-(1H-pyrazol-1-yl)ethanamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x ZDF: N-ethyl-N-({3-[1-(4-methylphenyl)cyclopentyl]-1,2,4-oxadiazol-5-yl}methyl)-2-(1H-pyrazol-1-yl)ethan-1-amine(Non-covalent)

ZDF.1: 22 residues within 4Å: Chain A: F.17, Y.20, L.21, V.26, L.30, A.34, L.37, P.39, K.41, I.52, T.54, S.56, F.58, R.59, Y.61, M.63, G.77, I.78, W.107, L.118, M.120, Q.129 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.17, A:Y.20, A:L.30, A:A.34, A:L.37, A:T.54, A:R.59, A:Y.61, A:I.78, A:I.78, A:W.107 Hydrogen bonds: A:K.41, A:T.54 Water bridges: A:W.107 pi-Cation interactions: A:K.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Plau, J. et al., Discovery of Nonretinoid Inhibitors of CRBP1: Structural and Dynamic Insights for Ligand-Binding Mechanisms. Acs Chem.Biol. (2023)

Release Date

2023-10-04

Peptides

Retinol-binding protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Retinol-binding protein 1

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