SMTL ID : 8gf7.1

Cryo-EM structure of serine 87 O-GlcNAc-modified alpha-synuclein fibrils

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: S.81 Ligands: NAG.2, NAG.3 No protein-ligand interaction detected (PLIP) NAG.2: 2 residues within 4Å: Chain B: S.81 Ligands: NAG.1 No protein-ligand interaction detected (PLIP) NAG.3: 2 residues within 4Å: Chain C: S.81 Ligands: NAG.1 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain D: S.81 Ligands: NAG.5 No protein-ligand interaction detected (PLIP) NAG.5: 3 residues within 4Å: Chain E: S.81 Ligands: NAG.4, NAG.6 No protein-ligand interaction detected (PLIP) NAG.6: 2 residues within 4Å: Chain F: S.81 Ligands: NAG.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Balana, A.T. et al., O-GlcNAc forces an alpha-synuclein amyloid strain with notably diminished seeding and pathology. Nat.Chem.Biol. (2024)

Release Date

2023-11-08

Peptides

Alpha-synuclein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Alpha-synuclein