SMTL ID : 8gfo.1

Room temperature X-ray structure of truncated SARS-CoV-2 main protease C145A mutant, residues 1-304, in complex with GC373

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ZH0: N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-oxo-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide(Non-covalent)

ZH0.1: 15 residues within 4Å: Chain A: H.41, M.49, F.140, L.141, N.142, S.144, A.145, H.163, H.164, M.165, E.166, H.172, D.187, R.188, Q.189 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:M.49, A:M.165, A:Q.189 Hydrogen bonds: A:F.140, A:S.144, A:H.164, A:E.166, A:Q.189 ZH0.2: 15 residues within 4Å: Chain B: H.41, M.49, F.140, L.141, N.142, S.144, A.145, H.163, H.164, M.165, E.166, H.172, D.187, R.188, Q.189 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:M.49, B:M.165, B:Q.189 Hydrogen bonds: B:F.140, B:S.144, B:H.164, B:E.166, B:E.166, B:Q.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kovalevsky, A. et al., Contribution of the catalytic dyad of SARS-CoV-2 main protease to binding covalent and noncovalent inhibitors. J.Biol.Chem. (2023)

Release Date

2023-07-12

Peptides

3C-like proteinase nsp5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3C-like proteinase nsp5

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