SMTL ID : 8gft.1

Hsp90 provides platform for CRaf dephosphorylation by PP5

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 25 residues within 4Å: Chain A: N.49, A.50, A.53, K.56, D.91, I.94, G.95, M.96, N.104, L.105, K.110, S.111, G.112, T.113, G.130, Q.131, F.132, G.133, V.134, G.135, F.136, Y.137, T.182 Ligands: MG.2, K.3 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.49, A:D.91, A:S.111, A:G.112, A:T.113, A:F.132, A:G.133, A:V.134, A:F.136, A:T.182

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: E.45, N.49, G.135 Ligands: ADP.1 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain B: N.49, G.130 Ligands: ATP.5 No protein-ligand interaction detected (PLIP)

2 x K: POTASSIUM ION(Non-covalent)

K.3: 8 residues within 4Å: Chain A: N.104, T.107, I.108, A.109, K.110, G.133, Y.137 Ligands: ADP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:G.133, A:Y.137 K.6: 6 residues within 4Å: Chain B: N.104, T.107, K.110, G.133, Y.137 Ligands: ATP.5 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:K.110, B:G.133

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.5: 26 residues within 4Å: Chain B: E.45, N.49, A.50, A.53, K.56, D.91, I.94, G.95, M.96, N.104, L.105, K.110, S.111, G.112, T.113, G.130, Q.131, F.132, G.133, V.134, G.135, F.136, T.182, R.395 Ligands: MG.4, K.6 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:N.49, B:K.56, B:D.91, B:G.95, B:N.104, B:S.111, B:S.111, B:G.112, B:T.113, B:T.113, B:G.130, B:F.132, B:G.133, B:V.134, B:G.135, B:F.136, B:T.182 Salt bridges: B:R.395

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.7: 8 residues within 4Å: Chain E: D.246, D.275, D.278, N.307, A.308, H.356, Y.455 Ligands: MN.8 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:D.246, E:D.275, E:D.275, E:D.278 MN.8: 5 residues within 4Å: Chain E: N.307, H.356, H.431, Y.455 Ligands: MN.7 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:H.431

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jaime-Garza, M. et al., Hsp90 provides a platform for kinase dephosphorylation by PP5. Nat Commun (2023)

Release Date

2023-05-03

Peptides

Heat shock protein HSP 90-beta: AB
Hsp90 co-chaperone Cdc37, N-terminally processed: C
RAF proto-oncogene serine/threonine-protein kinase: D
Serine/threonine-protein phosphatase 5: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Heat shock protein HSP 90-beta

Hsp90 co-chaperone Cdc37, N-terminally processed

RAF proto-oncogene serine/threonine-protein kinase

Serine/threonine-protein phosphatase 5

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